YRC Public Data Repository

Run Information:

Bait Protein:	CEP3
Organism:	Saccharomyces cerevisiae
Publication:	Sandall S, Severin F, McLeod IX, Yates JR 3rd, Oegema K, Hyman A, Desai A. A Bir1-Sli15 complex connects centromeres to microtubules and is required to sense kinetochore tension. Cell. 2006;127(6):1179-91.
Comments:	sample cbf3 from feb 2005
Raw Data:	Download DTASelect Filter text Download DTASelect HTML file

FILTERED Run Results: [unfilter] [View our MS interpretation guidelines.]
	Hit Protein	Protein Desc	Sequence Count	Spectrum Count	Sequence Coverage	NSAF	Mol. Wt.
[View Peptides]	SPT4	Protein involved in the regulating Pol I and Pol II transcription, pre-mRNA processing, kinetochore ...	5	13	78.4%	0.00246	11158
[View Peptides]	EF1B_YEAST	(P32471) Elongation factor 1-beta (EF-1-beta)	56	1196	75.6%	0.113	22689
[View Peptides]	TEF4	Translation elongation factor EF-1 gamma	75	2138	72.8%	0.1	46520
[View Peptides]	RET3	Zeta subunit of the coatomer complex (COPI), which coats Golgi-derived transport vesicles; involved ...	13	40	72.5%	0.00408	21688
[View Peptides]	RPP2B	Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction ...	11	73	71.8%	0.0128	11050
[View Peptides]	SEC21	Gamma subunit of coatomer, a heptameric protein complex that together with Arf1p forms the COPI coat...	63	456	68.4%	0.00941	104831
[View Peptides]	PUP2	Alpha 5 subunit of the 20S proteasome involved in ubiquitin-dependent catabolism; human homolog is s...	20	221	68.1%	0.0164	28617
[View Peptides]	CDC48	ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97; in a complex with Npl4p a...	78	1073	67.4%	0.0248	91996
[View Peptides]	RPB4	RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; involved recruitmen...	12	40	65.6%	0.00349	25414
[View Peptides]	PRE9	Alpha 3 subunit of the 20S proteasome, the only nonessential 20S subunit; may be replaced by the alp...	14	332	65.1%	0.0248	28714
[View Peptides]	SCL1	Alpha 1 subunit of the 20S proteasome involved in the degradation of ubiquitinated substrates; 20S p...	22	155	64.7%	0.0119	28001
[View Peptides]	GRX3	Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; monothiol glut...	16	119	64.6%	0.00806	32481
[View Peptides]	CAM1	Nuclear protein required for transcription of MXR1; binds the MXR1 promoter in the presence of other...	50	1456	63.9%	0.0677	47088
[View Peptides]	SUI2	Alpha subunit of the translation initiation factor eIF2, involved in the identification of the start...	23	539	63.2%	0.0342	34718
[View Peptides]	PRE1	Beta 4 subunit of the 20S proteasome; localizes to the nucleus throughout the cell cycle	10	38	63.1%	0.0037	22517
[View Peptides]	gi\|135054, gi\|4593	gi\|4593\|emb\|CAA27719.1\| unnamed protein product [Saccharomyces cerevisiae], gi\|135054\|sp\|P12385.1\|ER...	43	647	62.7%	0.0286	48991
[View Peptides]	RPN1_YEAST	(P38764) 26S proteasome regulatory subunit RPN1 (Proteasome non-ATPase subunit 1)	62	334	62.1%	0.0065	109361
[View Peptides]	SEC27	Essential beta'-coat protein of the COPI coatomer, involved in ER-to-Golgi and Golgi-to-ER transport...	48	582	61.6%	0.0126	99445
[View Peptides]	RPB10	RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III	4	32	61.4%	0.00882	8278
[View Peptides]	RPB7	RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p; involved recruitmen...	6	62	58.5%	0.007	19058
[View Peptides]	PRE4	Beta 7 subunit of the 20S proteasome	15	86	58.3%	0.00624	29443
[View Peptides]	PRE5	Alpha 6 subunit of the 20S proteasome	12	137	57.7%	0.0113	25604
[View Peptides]	SSZ1	Hsp70 protein that interacts with Zuo1p (a DnaJ homolog) to form a ribosome-associated complex that ...	46	317	57.0%	0.0107	62186
[View Peptides]	PRE6	Alpha 4 subunit of the 20S proteasome; may replace alpha 3 subunit (Pre9p) under stress conditions t...	16	58	56.7%	0.00441	28439
[View Peptides]	RNA1	GTPase activating protein (GAP) for Gsp1p, involved in nuclear transport	20	40	56.5%	0.0019	45816
[View Peptides]	RPC31	RNA polymerase III subunit C31	10	15	55.8%	0.00115	27724
[View Peptides]	RPB3	RNA polymerase II third largest subunit B44, part of central core; similar to prokaryotic alpha subu...	16	48	55.7%	0.00291	35298
[View Peptides]	COP1	Alpha subunit of COPI vesicle coatomer complex, which surrounds transport vesicles in the early secr...	64	590	54.9%	0.00948	135607
[View Peptides]	PUP3	Beta 3 subunit of the 20S proteasome involved in ubiquitin-dependent catabolism; human homolog is su...	16	203	54.1%	0.0191	22605
[View Peptides]	RAD6	Ubiquitin-conjugating enzyme (E2), involved in postreplication repair (as a heterodimer with Rad18p)...	3	4	53.5%	4.49E-4	19706
[View Peptides]	PRE7	Beta 6 subunit of the 20S proteasome	9	126	53.1%	0.0101	26871
[View Peptides]	RPC19	RNA polymerase subunit AC19, common to RNA polymerases I and III	6	9	52.8%	0.00122	16151
[View Peptides]	PRE2	Beta 5 subunit of the 20S proteasome, responsible for the chymotryptic activity of the proteasome	18	156	52.6%	0.0105	31637
[View Peptides]	SEC28	Epsilon-COP subunit of the coatomer; regulates retrograde Golgi-to-ER protein traffic; stabilizes Co...	16	229	52.0%	0.0149	33829
[View Peptides]	IKI3	Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; main...	58	332	51.8%	0.00475	152990
[View Peptides]	PRE8	Alpha 2 subunit of the 20S proteasome	13	86	51.6%	0.00664	27162
[View Peptides]	ABP1	Actin-binding protein of the cortical actin cytoskeleton, important for activation of the Arp2/3 com...	43	463	51.4%	0.0151	65576
[View Peptides]	SNF4	Activating gamma subunit of the AMP-activated Snf1p kinase complex (contains Snf1p and a Sip1p/Sip2p...	11	43	51.2%	0.00258	36401
[View Peptides]	PRE3	Beta 1 subunit of the 20S proteasome, responsible for cleavage after acidic residues in peptides	11	204	50.2%	0.0183	23548
[View Peptides]	SEC26	Essential beta-coat protein of the COPI coatomer, involved in ER-to-Golgi protein trafficking and ma...	53	515	49.8%	0.0102	109019
[View Peptides]	BCP1	Essential protein involved in nuclear export of Mss4p, which is a lipid kinase that generates phosph...	10	20	47.7%	0.00136	32661
[View Peptides]	TAF14	Subunit of TFIID, TFIIF, INO80, SWI/SNF, and NuA3 complexes, involved in RNA polymerase II transcrip...	6	10	47.5%	7.91E-4	27440
[View Peptides]	CIA1	WD40 repeat protein involved in assembly of cytosolic and nuclear iron-sulfur proteins; similar to t...	11	32	47.3%	0.00187	37275
[View Peptides]	POL30	Proliferating cell nuclear antigen (PCNA), functions as the sliding clamp for DNA polymerase delta; ...	11	19	47.3%	0.00142	28916
[View Peptides]	RPB2	RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subun...	48	96	46.3%	0.00151	138751
[View Peptides]	PBY1	Putative tubulin tyrosine ligase associated with P-bodies	24	34	45.8%	8.71E-4	86439
[View Peptides]	PIL1	Primary component of eisosomes, which are large immobile cell cortex structures associated with endo...	11	282	45.7%	0.0161	38349
[View Peptides]	YPR148C	Protein of unknown function that may interact with ribosomes, based on co-purification experiments; ...	13	25	45.5%	0.00111	49279
[View Peptides]	RPT5	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation ...	14	24	45.4%	0.00107	48256
[View Peptides]	LSP1	Primary component of eisosomes, which are large immobile patch structures at the cell cortex associa...	13	274	45.2%	0.0155	38071
[View Peptides]	RRP5	RNA binding protein with preference for single stranded tracts of U's involved in synthesis of both ...	78	782	45.1%	0.00873	193133
[View Peptides]	DCP1	Subunit of the Dcp1p-Dcp2p decapping enzyme complex, which removes the 5' cap structure from mRNAs p...	7	26	43.3%	0.00217	26266
[View Peptides]	GVP36	BAR domain-containing protein that localizes to both early and late Golgi vesicles; required for ada...	7	9	42.9%	5.33E-4	36670
[View Peptides]	SUI3	Beta subunit of the translation initiation factor eIF2, involved in the identification of the start ...	12	28	42.5%	0.0019	31574
[View Peptides]	RPB11	RNA polymerase II subunit B12.5; part of central core; similar to Rpc19p and bacterial alpha subunit	6	14	42.5%	0.00225	13616
[View Peptides]	RPB5	RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III; contacts DNA and affects tra...	6	42	42.3%	0.00377	25079
[View Peptides]	KAP95	Karyopherin beta, forms a complex with Srp1p/Kap60p; interacts with nucleoporins to mediate nuclear ...	23	70	42.0%	0.00157	94776
[View Peptides]	ZUO1	Cytosolic ribosome-associated chaperone that acts, together with Ssz1p and the Ssb proteins, as a ch...	15	120	41.8%	0.00535	49020
[View Peptides]	RPC82	RNA polymerase III subunit C82	20	45	41.6%	0.00133	74017
[View Peptides]	MET12	Protein with methylenetetrahydrofolate reductase (MTHFR) activity in vitro; null mutant has no pheno...	14	50	41.6%	0.00147	73942
[View Peptides]	gi\|14488811, gi\|...	gi\|178847521\|pdb\|3BDM\|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex, gi\|178847507\|pdb\|3BDM\|F...	16	98	41.5%	0.00659	31405
[View Peptides]	SNU13	RNA binding protein, part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP invol...	3	5	41.3%	7.66E-4	13569
[View Peptides]	RPN13	Subunit of the 19S regulatory particle of the 26S proteasome lid; acts as a ubiquitin receptor for t...	3	7	41.0%	8.66E-4	17902
[View Peptides]	MTC1	Protein of unknown function that may interact with ribosomes; green fluorescent protein (GFP)-fusion...	16	38	40.4%	0.00153	53477
[View Peptides]	HCR1	Dual function protein involved in translation initiation as a substoichiometric component (eIF3j) of...	13	19	40.4%	0.00138	29564
[View Peptides]	GCD11	Gamma subunit of the translation initiation factor eIF2, involved in the identification of the start...	24	123	40.2%	0.0045	57866
[View Peptides]	HS71_YEAST, HSP7...	(P10591) Heat shock protein SSA1 (Heat shock protein YG100), (P10591) Heat shock protein SSA1 (Heat ...	19	41	40.1%	0.00123	69526
[View Peptides]	HSP72_YEAST, HS7...	(P10592) Heat shock protein SSA2, (P10592) Heat shock protein SSA2	21	47	40.1%	0.00142	69339
[View Peptides]	GLC7	Type 1 serine/threonine protein phosphatase catalytic subunit, involved in many processes (eg: glyco...	8	10	40.1%	6.18E-4	35907
[View Peptides]	RPT2	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation ...	13	33	39.8%	0.00146	48828
[View Peptides]	YBR137W	Protein of unknown function; localized to the cytoplasm; binds to Replication Protein A (RPA); YBR13...	9	40	39.7%	0.00431	20454
[View Peptides]	RPO26	RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; simila...	5	7	39.4%	8.71E-4	17910
[View Peptides]	gi\|464861, gi\|45...	gi\|464861\|sp\|P33298.1\|PRS6B_YEAST RecName: Full=26S protease regulatory subunit 6B homolog; AltName:...	12	38	39.0%	0.00171	47970
[View Peptides]	NMA1	Nicotinic acid mononucleotide adenylyltransferase, involved in pathways of NAD biosynthesis, includi...	11	48	38.9%	0.00231	45859
[View Peptides]	CB34_YEAST, SKP1...	(P52286) Suppressor of kinetochore protein 1 (Centromere DNA-binding protein complex CBF3 subunit D)...	7	58	38.9%	0.0058	22199
[View Peptides]	CHZ1	Histone chaperone for Htz1p/H2A-H2B dimer; required for the stabilization of the Chz1p-Htz1-H2B comp...	3	3	38.8%	3.62E-4	18306
[View Peptides]	CMD1	Calmodulin; Ca++ binding protein that regulates Ca++ independent processes (mitosis, bud growth, act...	2	2	38.8%	2.63E-4	16135
[View Peptides]	CEG1	Alpha (guanylyltransferase) subunit of the mRNA capping enzyme, a heterodimer (the other subunit is ...	13	45	38.6%	0.00189	52764
[View Peptides]	RPO21	RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapep...	53	287	38.5%	0.0032	191610
[View Peptides]	RPO31	RNA polymerase III largest subunit C160, part of core enzyme; similar to bacterial beta-prime subuni...	42	149	38.4%	0.00197	162301
[View Peptides]	CKB2	Beta' regulatory subunit of casein kinase 2, a Ser/Thr protein kinase with roles in cell growth and ...	8	9	38.4%	6.73E-4	29842
[View Peptides]	DPH5	Methyltransferase required for synthesis of diphthamide, which is a modified histidine residue of tr...	11	38	38.0%	0.00244	33847
[View Peptides]	SRP14	Signal recognition particle (SRP) subunit, interacts with the RNA component of SRP to form the Alu d...	3	5	37.7%	6.61E-4	16430
[View Peptides]	HGH1	Nonessential protein of unknown function; predicted to be involved in ribosome biogenesis; green flu...	8	167	37.3%	0.00818	44952
[View Peptides]	DCP2	Catalytic subunit of the Dcp1p-Dcp2p decapping enzyme complex, which removes the 5' cap structure fr...	27	126	36.9%	0.00251	108667
[View Peptides]	RPC11	RNA polymerase III subunit C11; mediates pol III RNA cleavage activity and is important for terminat...	2	2	36.4%	3.51E-4	12513
[View Peptides]	SPT6	Transcription elongation factor required for the maintenance of chromatin structure during transcrip...	51	125	36.3%	0.00166	168291
[View Peptides]	SDS22	Conserved nuclear regulatory subunit of Glc7p type 1 protein serine-threonine phosphatase (PP1), fun...	7	9	36.1%	5.14E-4	38887
[View Peptides]	RPC40	RNA polymerase subunit AC40, common to RNA polymerase I and III	9	15	36.1%	8.64E-4	37687
[View Peptides]	RVB1	Essential protein involved in transcription regulation; component of chromatin remodeling complexes;...	13	23	35.9%	9.58E-4	50453
[View Peptides]	POP3	Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursor...	3	5	35.9%	4.95E-4	22612
[View Peptides]	ENP1	Protein associated with U3 and U14 snoRNAs, required for pre-rRNA processing and 40S ribosomal subun...	12	19	35.8%	7.59E-4	55137
[View Peptides]	RVB2	Essential protein involved in transcription regulation; component of chromatin remodeling complexes;...	11	34	35.5%	0.00139	51612
[View Peptides]	gi\|173126, gi\|136683	gi\|173126\|gb\|AAA35189.1\| ubiquitin-specific processing protease I [Saccharomyces cerevisiae], gi\|136...	20	51	35.4%	0.00122	92753
[View Peptides]	SDC1	Subunit of the COMPASS (Set1C) complex, which methylates lysine 4 of histone H3 and is required in c...	3	4	35.4%	4.41E-4	19446
[View Peptides]	MSH2	Protein that forms heterodimers with Msh3p and Msh6p that bind to DNA mismatches to initiate the mis...	22	48	35.2%	9.61E-4	108884
[View Peptides]	COPD_YEAST	(P43621) Coatomer subunit delta (Delta-coat protein) (Delta-COP)	21	48	34.9%	0.0017	60497
[View Peptides]	CCT7	Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of...	11	16	34.2%	5.61E-4	59736
[View Peptides]	gi\|731632, gi\|62...	gi\|731632\|sp\|P38758\|YHG9_YEAST Hypothetical 57.0 kDa protein in SOD2-RPL27A intergenic region, pir\|\|...	12	18	34.2%	6.7E-4	57034
[View Peptides]	LSB5	Protein of unknown function; binds Las17p, which is a homolog of human Wiskott-Aldrich Syndrome prot...	10	60	34.2%	0.00327	39872
[View Peptides]	AB140_YEAST, ABP...	(Q08641) Actin-binding protein ABP140, (Q08641) Actin-binding protein ABP140	19	40	34.0%	0.00123	71355
[View Peptides]	OCA1	Putative protein tyrosine phosphatase, required for cell cycle arrest in response to oxidative damag...	6	54	34.0%	0.00438	27205
[View Peptides]	RET1	Second-largest subunit of RNA polymerase III, which is responsible for the transcription of tRNA and...	28	45	33.6%	7.56E-4	129456
[View Peptides]	PDI1	Protein disulfide isomerase, multifunctional protein resident in the endoplasmic reticulum lumen, es...	13	41	33.1%	0.00152	58227
[View Peptides]	PTC1	Type 2C protein phosphatase (PP2C); inactivates the osmosensing MAPK cascade by dephosphorylating Ho...	5	27	33.1%	0.00185	31550
[View Peptides]	RPB9	RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site selection a...	3	8	32.8%	0.00127	14288
[View Peptides]	ELP3	Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; exhi...	13	24	32.7%	8.31E-4	63657
[View Peptides]	TIF5	Translation initiation factor eIF-5; N-terminal domain functions as a GTPase-activating protein to m...	7	23	32.6%	0.0011	45261
[View Peptides]	SNF1	AMP-activated serine/threonine protein kinase found in a complex containing Snf4p and members of the...	14	19	32.4%	5.79E-4	72045
[View Peptides]	UTP8	Nucleolar protein required for export of tRNAs from the nucleus; also copurifies with the small subu...	14	20	32.3%	5.41E-4	80191
[View Peptides]	UTP9	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is ...	9	14	32.2%	4.7E-4	65272
[View Peptides]	SRP1	Karyopherin alpha homolog, forms a dimer with karyopherin beta Kap95p to mediate import of nuclear p...	15	41	31.9%	0.00146	60441
[View Peptides]	RPN8_YEAST	(Q08723) 26S proteasome regulatory subunit RPN8	8	11	31.8%	6.3E-4	38181
[View Peptides]	KAR2	ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding i...	17	59	31.7%	0.00167	74468
[View Peptides]	NUP2	Nucleoporin involved in nucleocytoplasmic transport, binds to either the nucleoplasmic or cytoplasmi...	15	23	31.5%	6.16E-4	77881
[View Peptides]	RPB8	RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III	3	18	31.5%	0.00238	16511
[View Peptides]	TFA1	TFIIE large subunit, involved in recruitment of RNA polymerase II to the promoter, activation of TFI...	11	16	31.3%	6.4E-4	54742
[View Peptides]	CCT4	Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of...	9	11	31.2%	4.02E-4	57604
[View Peptides]	YOL098C	Putative metalloprotease	18	45	30.8%	8.37E-4	118392
[View Peptides]	NAP1	Protein that interacts with mitotic cyclin Clb2p; required for the regulation of microtubule dynamic...	8	16	30.7%	7.4E-4	47885
[View Peptides]	RXT3	Subunit of the RPD3L complex; involved in histone deacetylation	3	5	30.6%	3.28E-4	33812
[View Peptides]	CCT8	Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of...	12	22	30.5%	7.47E-4	61662
[View Peptides]	UTP15	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is ...	8	16	30.4%	6.02E-4	57686
[View Peptides]	ARG82	Inositol polyphosphate multikinase (IPMK), sequentially phosphorylates Ins(1,4,5)P3 to form Ins(1,3,...	8	16	30.4%	8.7E-4	40353
[View Peptides]	RIM1	Single-stranded DNA-binding protein essential for mitochondrial genome maintenance; involved in mito...	2	3	30.4%	4.29E-4	15386
[View Peptides]	SPT5	Protein involved in regulating Pol I and Pol II transcription and pre-mRNA processing; forms a compl...	25	50	30.3%	9.08E-4	115650
[View Peptides]	ARP8	Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling en...	18	45	30.3%	9.86E-4	100209
[View Peptides]	RPC34	RNA polymerase III subunit C34; interacts with TFIIIB70 and is a key determinant in pol III recruitm...	7	20	30.3%	0.00122	36135
[View Peptides]	PUP1	Beta 2 subunit of the 20S proteasome; endopeptidase with trypsin-like activity that cleaves after ba...	5	65	30.3%	0.00481	28268
[View Peptides]	TOA2	TFIIA small subunit; involved in transcriptional activation, acts as antirepressor or as coactivator...	2	11	30.3%	0.00174	13458
[View Peptides]	UTP5	Subunit of U3-containing Small Subunit (SSU) processome complex involved in production of 18S rRNA a...	9	11	30.2%	3.3E-4	72002
[View Peptides]	AIM7	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	2	2	30.2%	2.59E-4	17130
[View Peptides]	YGR237C	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	13	13	30.1%	3.2E-4	89241
[View Peptides]	SRP68	Core component of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functio...	14	25	30.1%	8.05E-4	69006
[View Peptides]	gi\|1732237, gi\|2...	sp\|P89105\|CTR9_YEAST CTR9 protein, gi\|1732237\|gb\|AAB38704.1\| CTR9 [Saccharomyces cerevisiae]	26	87	29.9%	0.00156	124751
[View Peptides]	YGL242C	Putative protein of unknown function; deletion mutant is viable	6	16	29.8%	0.00171	20074
[View Peptides]	RPT1	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation ...	11	43	29.6%	0.00178	51983
[View Peptides]	NIP7	Nucleolar protein required for 60S ribosome subunit biogenesis, constituent of 66S pre-ribosomal par...	3	3	29.3%	3.2E-4	20381
[View Peptides]	YGR017W	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to bo...	4	13	29.0%	8.45E-4	34679
[View Peptides]	gi\|3121838, gi\|2...	gi\|3121838\|sp\|O13297.1\|CET1_YEAST RecName: Full=mRNA-capping enzyme subunit beta; AltName: Full=Poly...	15	32	28.8%	0.00112	61822
[View Peptides]	RPT4	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation ...	9	13	28.8%	5.74E-4	49408
[View Peptides]	IES3	Subunit of the INO80 chromatin remodeling complex	3	4	28.8%	3.09E-4	28243
[View Peptides]	LTV1	Component of the GSE complex, which is required for proper sorting of amino acid permease Gap1p; req...	9	32	28.5%	0.00133	53390
[View Peptides]	FCP1	Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-termina...	11	18	28.4%	4.74E-4	83441
[View Peptides]	VPS75	NAP family histone chaperone; binds to histones and Rtt109p, stimulating histone acetyltransferase a...	4	9	28.4%	6.58E-4	30615
[View Peptides]	FAP7	Essential NTPase required for small ribosome subunit synthesis, mediates processing of the 20S pre-r...	5	6	28.4%	5.88E-4	22723
[View Peptides]	SWH1	Protein similar to mammalian oxysterol-binding protein; contains ankyrin repeats; localizes to the G...	27	38	28.1%	6.17E-4	135070
[View Peptides]	AML1	Putative protein of unknown function with similarity to methyltransferase family members; green fluo...	6	31	28.0%	0.0031	22153
[View Peptides]	ELP2	Subunit of Elongator complex, which is required for modification of wobble nucleosides in tRNA; targ...	17	32	27.9%	7.84E-4	89410
[View Peptides]	DPB4	Shared subunit of DNA polymerase (II) epsilon and of ISW2/yCHRAC chromatin accessibility complex; in...	4	6	27.6%	5.91E-4	21997
[View Peptides]	PAH1	Mg<sup>2+</sup>-dependent phosphatidate (PA) phosphatase, catalyzes the dephosphorylation of PA to y...	11	13	27.5%	2.91E-4	95031
[View Peptides]	TIF11	Translation initiation factor eIF1A, essential protein that forms a complex with Sui1p (eIF1) and th...	3	67	27.5%	0.00845	17435
[View Peptides]	DRE2	Protein that may prevent apoptosis by forming a complex with Tah18p in the absence of stress; requir...	8	17	27.3%	9.43E-4	38543
[View Peptides]	MCM2	Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin ...	16	29	27.2%	6.45E-4	98779
[View Peptides]	gi\|2326846	gi\|2326846\|emb\|CAA97990.1\| unnamed protein product [Saccharomyces cerevisiae]	3	5	27.1%	3.35E-4	32759
[View Peptides]	TOP2	Essential type II topoisomerase, relieves torsional strain in DNA by cleaving and re-sealing the pho...	28	82	27.0%	0.00111	164214
[View Peptides]	RPT6	One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation ...	9	13	26.9%	6.19E-4	45272
[View Peptides]	CTF4_YEAST	(Q01454) DNA polymerase alpha-binding protein (Protein CTF4) (Protein POB1) (Chromosome replication ...	15	37	26.5%	7.71E-4	104293
[View Peptides]	AKL1	Ser-Thr protein kinase, member (with Ark1p and Prk1p) of the Ark kinase family; involved in endocyto...	15	15	26.4%	2.61E-4	123989
[View Peptides]	GRX1	Hydroperoxide and superoxide-radical responsive heat-stable glutathione-dependent disulfide oxidored...	2	2	26.4%	3.51E-4	12380
[View Peptides]	THO2	Subunit of the THO complex, which is required for efficient transcription elongation and involved in...	28	72	26.3%	8.7E-4	183930
[View Peptides]	UBP12	Ubiquitin carboxyl-terminal hydrolase, ubiquitin-specific protease present in the nucleus and cytopl...	23	25	26.3%	3.85E-4	143192
[View Peptides]	NUP60	Subunit of the nuclear pore complex (NPC), functions to anchor Nup2p to the NPC in a process control...	7	10	26.3%	3.58E-4	59039
[View Peptides]	TPS1	Synthase subunit of trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storag...	6	11	26.1%	4.29E-4	56148
[View Peptides]	SRP54	Signal recognition particle (SRP) subunit (homolog of mammalian SRP54); contains the signal sequence...	10	27	25.7%	9.63E-4	59624
[View Peptides]	MDN1	Huge dynein-related AAA-type ATPase (midasin), forms extended pre-60S particle with the Rix1 complex...	88	173	25.4%	6.8E-4	559316
[View Peptides]	YPL260W	Putative substrate of cAMP-dependent protein kinase (PKA); green fluorescent protein (GFP)-fusion pr...	6	12	25.4%	4.2E-4	62780
[View Peptides]	BBC1	Protein possibly involved in assembly of actin patches; interacts with an actin assembly factor Las1...	20	37	25.0%	6.17E-4	128296
[View Peptides]	RPC53	RNA polymerase III subunit C53	8	19	24.6%	8.69E-4	46667
[View Peptides]	gi\|133003, gi\|17...	gi\|173235\|gb\|AAA35236.1\| 5S ribosomal RNA binding-protein [Saccharomyces cerevisiae], gi\|173232\|gb\|A...	3	4	24.6%	2.6E-4	33743
[View Peptides]	RPD3	Histone deacetylase; regulates transcription and silencing; plays a role in regulating Ty1 transposi...	7	7	24.5%	3.12E-4	48904
[View Peptides]	PEA2	Coiled-coil polarisome protein required for polarized morphogenesis, cell fusion, and low affinity C...	9	9	24.5%	4.13E-4	48165
[View Peptides]	RPC25	RNA polymerase III subunit C25, required for transcription initiation; forms a heterodimer with Rpc1...	3	6	24.5%	5.46E-4	24326
[View Peptides]	NUP159	Nucleoporin, subunit of the nuclear pore complex that is found exclusively on the cytoplasmic side, ...	16	24	24.4%	3.17E-4	158907
[View Peptides]	gi\|1903280	gi\|1903280\|emb\|CAA98620.1\| USO1 [Saccharomyces cerevisiae]	26	39	24.4%	5.93E-4	147463
[View Peptides]	NOP2	Probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and la...	12	14	24.4%	4.37E-4	69812
[View Peptides]	RKM3	Ribosomal lysine methyltransferase specific for monomethylation of Rpl42ap and Rpl42bp (lysine 40); ...	7	9	24.3%	3.15E-4	62594
[View Peptides]	RPN5	Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to mammalian p55 subunit...	7	11	24.3%	4.77E-4	51769
[View Peptides]	UME1	Negative regulator of meiosis, required for repression of a subset of meiotic genes during vegetativ...	6	6	24.3%	2.52E-4	51022
[View Peptides]	NBP2	Protein involved in the HOG (high osmolarity glycerol) pathway, negatively regulates Hog1p by recrui...	4	7	24.2%	5.72E-4	26571
[View Peptides]	SRP21_YEAST, SR2...	(P32342) Signal recognition particle subunit SRP21 (Signal recognition particle 21 kDa protein), (P3...	4	11	24.1%	0.00128	18294
[View Peptides]	KC22_YEAST, CSK2...	(P19454) Casein kinase II, alpha' chain (CK II) (EC 2.7.1.37), (P19454) Casein kinase II subunit alp...	7	9	24.0%	5.14E-4	39272
[View Peptides]	gi\|2507200, gi\|7...	gi\|733594\|gb\|AAA64421.1\| CaM kinase-like protein kinase, gi\|2507200\|sp\|P38623.2\|RCK2_YEAST RecName: ...	15	24	23.9%	7.59E-4	68041
[View Peptides]	RRP9	Protein involved in pre-rRNA processing, associated with U3 snRNP; component of small ribosomal subu...	9	11	23.9%	3.7E-4	65054
[View Peptides]	LEO1	Component of the Paf1 complex, which associates with RNA polymerase II and is involved in histone me...	7	11	23.9%	4.57E-4	53920
[View Peptides]	CHD1	Nucleosome remodeling factor that functions in regulation of transcription elongation; contains a ch...	29	48	23.6%	6.31E-4	168240
[View Peptides]	SPA2	Component of the polarisome, which functions in actin cytoskeletal organization during polarized gro...	24	35	23.2%	4.61E-4	163142
[View Peptides]	UFD4	Ubiquitin-protein ligase (E3) that interacts with Rpt4p and Rpt6p, two subunits of the 19S particle ...	18	28	23.1%	3.64E-4	167842
[View Peptides]	RPN6	Essential, non-ATPase regulatory subunit of the 26S proteasome lid required for the assembly and act...	8	14	23.0%	6.22E-4	49774
[View Peptides]	RPN2_YEAST	(P32565) 26S proteasome regulatory subunit RPN2	16	83	22.9%	0.0017	104101
[View Peptides]	TAF6	Subunit (60 kDa) of TFIID and SAGA complexes, involved in transcription initiation of RNA polymerase...	5	5	22.9%	1.87E-4	57902
[View Peptides]	MET18	DNA repair and TFIIH regulator, required for both nucleotide excision repair (NER) and RNA polymeras...	15	28	22.8%	5.24E-4	117882
[View Peptides]	UBX5	UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p	10	19	22.8%	7.33E-4	56737
[View Peptides]	YLR287C	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	7	41	22.8%	0.00223	40928
[View Peptides]	YKE2	Subunit of the heterohexameric Gim/prefoldin protein complex involved in the folding of alpha-tubuli...	2	4	22.8%	6.77E-4	13284
[View Peptides]	PLP2	Essential protein that interacts with the CCT (chaperonin containing TCP-1) complex to stimulate act...	3	4	22.7%	2.7E-4	32793
[View Peptides]	MAM33	Acidic protein of the mitochondrial matrix involved in oxidative phosphorylation; related to the hum...	4	17	22.6%	0.00123	30132
[View Peptides]	RPC17	RNA polymerase III subunit C17; physically interacts with C31, C11, and TFIIIB70; may be involved in...	2	3	22.4%	3.6E-4	18610
[View Peptides]	RLF2	Largest subunit (p90) of the Chromatin Assembly Complex (CAF-1) with Cac2p and Msi1p that assembles ...	8	8	22.3%	2.55E-4	70210
[View Peptides]	MSI1	Subunit of chromatin assembly factor I (CAF-1), negative regulator of the RAS/cAMP pathway via seque...	4	11	22.3%	5.03E-4	47365
[View Peptides]	PAF1	Component of the Paf1p complex that binds to and modulates the activity of RNA polymerases I and II;...	9	13	22.0%	5.64E-4	51801
[View Peptides]	MFT1	Subunit of the THO complex, which is a nuclear complex comprised of Hpr1p, Mft1p, Rlr1p, and Thp2p, ...	5	6	21.9%	2.95E-4	44996
[View Peptides]	TOA1	TFIIA large subunit; involved in transcriptional activation, acts as antirepressor or as coactivator...	4	4	21.7%	2.7E-4	32201
[View Peptides]	TAF5	Subunit (90 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation...	10	14	21.6%	3.39E-4	88968
[View Peptides]	TAF8	TFIID subunit (65 kDa), involved in RNA polymerase II transcription initiation	7	10	21.6%	3.78E-4	57986
[View Peptides]	RPN9	Non-ATPase regulatory subunit of the 26S proteasome, has similarity to putative proteasomal subunits...	6	7	21.6%	3.44E-4	45783
[View Peptides]	SRP72	Core component of the signal recognition particle (SRP) ribonucleoprotein (RNP) complex that functio...	11	19	21.5%	5.67E-4	74273
[View Peptides]	DMA1	Protein involved in ubiquitin ligation; plays a role in regulating spindle position and orientation;...	7	10	21.4%	4.64E-4	46098
[View Peptides]	TSR3	Protein required for correct processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; g...	4	4	21.4%	2.47E-4	35686
[View Peptides]	RS3_YEAST	(P05750) 40S ribosomal protein S3 (YS3) (RP13)	5	97	21.3%	0.00783	26372
[View Peptides]	FUN30	Protein whose overexpression affects chromosome stability, potential Cdc28p substrate; homolog of Sn...	16	20	21.2%	3.41E-4	128507
[View Peptides]	GYS2_YEAST	(P27472) Glycogen [starch] synthase isoform 2 (EC 2.4.1.11)	11	18	21.2%	4.93E-4	79948
[View Peptides]	MSH6	Protein required for mismatch repair in mitosis and meiosis, forms a complex with Msh2p to repair bo...	16	26	20.9%	4.04E-4	140080
[View Peptides]	CRP1	Protein that binds to cruciform DNA structures	6	7	20.9%	2.9E-4	51116
[View Peptides]	CKB1	Beta regulatory subunit of casein kinase 2, a Ser/Thr protein kinase with roles in cell growth and p...	3	4	20.9%	2.78E-4	32265
[View Peptides]	SSN2	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form ...	12	15	20.8%	2.04E-4	160000
[View Peptides]	ENP2	Essential nucleolar protein, required for biogenesis of the small ribosomal subunit; contains WD rep...	8	14	20.8%	3.82E-4	81748
[View Peptides]	CDC123	Protein involved in nutritional control of the cell cycle; regulates abundance of the translation in...	4	5	20.8%	2.68E-4	41852
[View Peptides]	gi\|1351133, gi\|1...	gi\|1351133\|sp\|P40016\|RPN3_YEAST 26S proteasome regulatory subunit RPN3, gi\|134047880\|sp\|P40016.4\|RPN...	10	22	20.7%	8.12E-4	60423
[View Peptides]	YOR352W	Putative protein of unknown function; expression levels regulated by Arg5,6p; green fluorescent prot...	4	5	20.7%	2.81E-4	39275
[View Peptides]	COG2	Essential component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tet...	2	2	20.7%	1.4E-4	31800
[View Peptides]	UTP13	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is ...	8	13	20.6%	3.07E-4	91032
[View Peptides]	PSY4	Putative regulatory subunit of an evolutionarily conserved protein phosphatase; localization is cell...	5	7	20.6%	3.06E-4	50655
[View Peptides]	NMA2	Nicotinic acid mononucleotide adenylyltransferase, involved in de novo and salvage synthesis of NAD(...	5	5	20.5%	2.44E-4	44909
[View Peptides]	DIP2	Nucleolar protein, specifically associated with the U3 snoRNA, part of the large ribonucleoprotein c...	14	32	20.4%	6.55E-4	106342
[View Peptides]	CDC73	Component of the Paf1p complex that binds to and modulates the activity of RNA polymerases I and II;...	6	7	20.4%	3.44E-4	44456
[View Peptides]	CBF5	Pseudouridine synthase catalytic subunit of box H/ACA small nucleolar ribonucleoprotein particles (s...	7	15	20.3%	5.99E-4	54705
[View Peptides]	BMH1_YEAST	(P29311) Protein BMH1	4	5	20.3%	3.63E-4	29960
[View Peptides]	SHP1	UBX (ubiquitin regulatory X) domain-containing protein that regulates Glc7p phosphatase activity and...	5	5	20.1%	2.28E-4	46987
[View Peptides]	LAA1	AP-1 accessory protein; colocalizes with clathrin to the late-Golgi apparatus; involved in TGN-endos...	21	62	19.8%	5.94E-4	229898
[View Peptides]	HPR1	Subunit of THO/TREX complexes that couple transcription elongation with mitotic recombination and wi...	11	17	19.8%	4.36E-4	87829
[View Peptides]	SPT8	Subunit of the SAGA transcriptional regulatory complex but not present in SAGA-like complex SLIK/SAL...	9	9	19.4%	2.88E-4	66190
[View Peptides]	HSP33	Possible chaperone and cysteine protease with similarity to E. coli Hsp31 and S. cerevisiae Hsp31p, ...	2	2	19.4%	1.63E-4	25926
[View Peptides]	SGF29	Probable subunit of SAGA histone acetyltransferase complex	3	3	19.3%	2.23E-4	29381
[View Peptides]	FUN12	GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes a...	15	29	19.2%	5.58E-4	112268
[View Peptides]	BRE2	Subunit of COMPASS (Set1C) complex, which methylates Lys4 of histone H3 and functions in silencing a...	6	7	19.2%	2.67E-4	58348
[View Peptides]	SEC13	Component of both the Nup84 nuclear pore sub-complex and the Sec13p-Sec31p complex of the COPII vesi...	6	6	19.2%	3.9E-4	33043
[View Peptides]	RPC37	RNA polymerase III subunit C37	5	28	19.1%	0.00192	32142
[View Peptides]	HBS1	GTP binding protein with sequence similarity to the elongation factor class of G proteins, EF-1alpha...	13	21	19.0%	6.63E-4	68730
[View Peptides]	TEX1	Protein involved in mRNA export, component of the transcription export (TREX) complex	5	7	19.0%	3.2E-4	47167
[View Peptides]	UTP25	Nucleolar protein that cosediments with the 40S ribosomal subunit and is required for its biogenesis...	9	10	18.9%	2.68E-4	83991
[View Peptides]	TSR2	Protein with a potential role in pre-rRNA processing	5	15	18.9%	0.00116	29003
[View Peptides]	TPS2	Phosphatase subunit of the trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the...	7	7	18.8%	1.51E-4	102976
[View Peptides]	THP2	Subunit of the THO complex, which connects transcription elongation and mitotic recombination, and o...	4	6	18.8%	4.44E-4	30299
[View Peptides]	OCA2	Putative protein with similarity to predicted tyrosine phosphatases Oca1p and Siw14p; green fluoresc...	2	2	18.8%	1.96E-4	22472
[View Peptides]	UBP8	Ubiquitin-specific protease that is a component of the SAGA (Spt-Ada-Gcn5-Acetyltransferase) acetyla...	7	9	18.7%	3.69E-4	53623
[View Peptides]	ACT1	Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functio...	4	4	18.7%	2.06E-4	41690
[View Peptides]	RRP1	Essential evolutionarily conserved nucleolar protein necessary for biogenesis of 60S ribosomal subun...	7	41	18.7%	0.00285	33203
[View Peptides]	YRB30	RanGTP-binding protein, inhibits RanGAP1 (Rna1p)-mediated GTP hydrolysis of RanGTP (Gsp1p); shares s...	6	10	18.6%	4.39E-4	50296
[View Peptides]	TCP1	Alpha subunit of chaperonin-containing T-complex, which mediates protein folding in the cytosol; inv...	5	12	18.4%	4.14E-4	60481
[View Peptides]	HSM3	Proteasome-interacting protein involved in the assembly of the base subcomplex of the 19S proteasoma...	6	10	18.3%	4.02E-4	55543
[View Peptides]	RPN11	Metalloprotease subunit of the 19S regulatory particle of the 26S proteasome lid; couples the deubiq...	4	7	18.3%	4.41E-4	34398
[View Peptides]	gi\|2498507, gi\|1...	gi\|2498507\|sp\|Q92325\|LAG2_YEAST Longevity-assurance protein 2, gi\|1616989\|gb\|AAB16890.1\| Lag2p	7	10	18.2%	2.84E-4	77541
[View Peptides]	PSY2	Putative subunit of an evolutionarily conserved protein phosphatase complex containing the catalytic...	8	22	18.1%	4.95E-4	98053
[View Peptides]	SIW14	Tyrosine phosphatase that plays a role in actin filament organization and endocytosis; localized to ...	4	5	18.1%	3.43E-4	32755
[View Peptides]	gi\|1174562, gi\|6...	gi\|607956\|gb\|AAA62664.1\| transcription factor TFIIE, small subunit, gi\|1174562\|sp\|P36145.2\|T2EB_YEAS...	7	8	18.0%	4.71E-4	37054
[View Peptides]	CDC34	Ubiquitin-conjugating enzyme (E2) and catalytic subunit of SCF ubiquitin-protein ligase complex (tog...	5	6	18.0%	3.92E-4	34065
[View Peptides]	MET13	Major isozyme of methylenetetrahydrofolate reductase, catalyzes the reduction of 5,10-methylenetetra...	7	8	17.9%	2.58E-4	68472
[View Peptides]	SAP30	Subunit of a histone deacetylase complex, along with Rpd3p and Sin3p, that is involved in silencing ...	2	2	17.9%	1.92E-4	23026
[View Peptides]	DUF1	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	10	13	17.8%	2.25E-4	125382
[View Peptides]	NHP10	Protein related to mammalian high mobility group proteins; preferentially binds DNA ends, protecting...	2	2	17.7%	1.9E-4	23857
[View Peptides]	HFI1	Adaptor protein required for structural integrity of the SAGA complex, a histone acetyltransferase-c...	5	6	17.6%	2.37E-4	54466
[View Peptides]	RTN1	ER membrane protein that interacts with Sey1p to maintain ER morphology; interacts with exocyst subu...	3	3	17.6%	1.96E-4	32916
[View Peptides]	SPT20	Subunit of the SAGA transcriptional regulatory complex, involved in maintaining the integrity of the...	5	9	17.5%	2.88E-4	67797
[View Peptides]	YMR258C	Protein of unknown function with similarity to F-box proteins; physically interacts with Skp1p; gree...	6	11	17.5%	3.84E-4	64405
[View Peptides]	NSP1	Essential component of the nuclear pore complex, which mediates nuclear import and export, found in ...	5	14	17.4%	3.28E-4	86516
[View Peptides]	IES1	Subunit of the INO80 chromatin remodeling complex	6	9	17.3%	2.51E-4	78753
[View Peptides]	BUD21	Component of small ribosomal subunit (SSU) processosome that contains U3 snoRNA; originally isolated...	2	6	17.3%	5.41E-4	24385
[View Peptides]	SEC16	COPII vesicle coat protein required for ER transport vesicle budding; Sec16p is bound to the periphe...	19	24	17.1%	2.11E-4	241694
[View Peptides]	SKY1	SR protein kinase (SRPK) involved in regulating proteins involved in mRNA metabolism and cation home...	8	14	17.1%	3.64E-4	83238
[View Peptides]	NOP56	Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that ...	4	4	17.1%	1.53E-4	56864
[View Peptides]	NBP1	Spindle pole body (SPB) component, required for the insertion of the duplication plaque into the nuc...	2	2	16.9%	1.21E-4	37354
[View Peptides]	HSH155	U2-snRNP associated splicing factor that forms extensive associations with the branch site-3' splice...	9	9	16.7%	1.79E-4	110028
[View Peptides]	GYS1_YEAST	(P23337) Glycogen [starch] synthase isoform 1 (EC 2.4.1.11)	7	9	16.7%	2.46E-4	80379
[View Peptides]	RTG2	Sensor of mitochondrial dysfunction; regulates the subcellular location of Rtg1p and Rtg3p, transcri...	6	8	16.7%	2.63E-4	65572
[View Peptides]	SLG1	Sensor-transducer of the stress-activated PKC1-MPK1 kinase pathway involved in maintenance of cell w...	3	3	16.7%	1.53E-4	39270
[View Peptides]	LEU3	Zinc-finger transcription factor that regulates genes involved in branched chain amino acid biosynth...	7	15	16.6%	3.27E-4	100153
[View Peptides]	VPS33	ATP-binding protein that is a subunit of the HOPS complex and of the CORVET tethering complex; essen...	7	11	16.6%	3.07E-4	79271
[View Peptides]	PPH3	Catalytic subunit of an evolutionarily conserved protein phosphatase complex containing Psy2p and th...	2	2	16.6%	1.25E-4	35264
[View Peptides]	SAP190	Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; me...	9	10	16.5%	1.87E-4	117098
[View Peptides]	POP1	Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursor...	9	14	16.5%	3.09E-4	100395
[View Peptides]	SDS23	One of two S. cerevisiae homologs (Sds23p and Sds24p) of the S. pombe Sds23 protein, which is implic...	6	7	16.5%	2.56E-4	58112
[View Peptides]	PRS1	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP, which is required for nucleot...	3	3	16.4%	1.36E-4	47048
[View Peptides]	NRG2	Transcriptional repressor that mediates glucose repression and negatively regulates filamentous grow...	2	2	16.4%	1.75E-4	25009
[View Peptides]	PEP5	Component of CORVET tethering complex; peripheral vacuolar membrane protein required for protein tra...	11	18	16.3%	3.38E-4	117477
[View Peptides]	TFC7	One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part...	3	4	16.3%	1.77E-4	49146
[View Peptides]	END3	EH domain-containing protein involved in endocytosis, actin cytoskeletal organization and cell wall ...	5	6	16.3%	3.32E-4	40297
[View Peptides]	HSP76_YEAST, HS7...	(P40150) Heat shock protein SSB2, (P40150) Heat shock protein SSB2	11	16	16.0%	5.04E-4	66463
[View Peptides]	HS75_YEAST, HSP7...	(P11484) Heat shock protein SSB1 (Cold-inducible protein YG101), (P11484) Heat shock protein SSB1 (C...	11	16	16.0%	5.04E-4	66470
[View Peptides]	RPA43	RNA polymerase I subunit A43	2	2	16.0%	1.18E-4	36224
[View Peptides]	UBP2	Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; interacts with Rsp5p...	10	18	15.8%	2.73E-4	146354
[View Peptides]	LSB1	Protein containing an N-terminal SH3 domain; binds Las17p, which is a homolog of human Wiskott-Aldri...	2	2	15.8%	1.6E-4	26139
[View Peptides]	UTP10	Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is ...	18	44	15.7%	4.8E-4	200080
[View Peptides]	EDE1	Key endocytic protein involved in a network of interactions with other endocytic proteins, binds mem...	13	18	15.7%	2.51E-4	150783
[View Peptides]	UTP21	Subunit of U3-containing 90S preribosome and Small Subunit (SSU) processome complexes involved in pr...	10	15	15.7%	3.08E-4	104791
[View Peptides]	MAK5	Essential nucleolar protein, putative DEAD-box RNA helicase required for maintenance of M1 dsRNA vir...	8	10	15.7%	2.5E-4	87048
[View Peptides]	RTT103	Protein that interacts with exonuclease Rat1p and Rai1p and plays a role in transcription terminatio...	5	32	15.6%	0.00151	46488
[View Peptides]	TPM1	Major isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polar...	2	2	15.6%	1.94E-4	23541
[View Peptides]	SPT7	Subunit of the SAGA transcriptional regulatory complex, involved in proper assembly of the complex; ...	10	12	15.5%	1.74E-4	152617
[View Peptides]	gi\|1870111	gi\|1870111\|emb\|CAA85110.1\| unnamed protein product [Saccharomyces cerevisiae]	2	2	15.5%	1.07E-4	41583
[View Peptides]	ESF2	Essential nucleolar protein involved in pre-18S rRNA processing; binds to RNA and stimulates ATPase ...	5	6	15.5%	3.66E-4	36408
[View Peptides]	DOC1	Processivity factor required for the ubiquitination activity of the anaphase promoting complex (APC)...	2	2	15.5%	1.36E-4	32822
[View Peptides]	APL4	Gamma-adaptin, large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; invo...	11	21	15.3%	4.87E-4	93624
[View Peptides]	gi\|2131088, gi\|2...	sp\|P39531\|YJU4_YEAST Hypothetical 75.9 kDa protein in NCE1-PRP21 intergenic region, gi\|2131088\|emb\|C...	7	20	15.3%	5.91E-4	75856
[View Peptides]	YOR051C	Nuclear protein that inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model s...	3	6	15.3%	2.81E-4	47352
[View Peptides]	CUE5	Protein containing a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiqui...	2	2	15.1%	9.39E-5	46870
[View Peptides]	CCT6	Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, essential protein that is re...	4	9	15.0%	3.18E-4	59924
[View Peptides]	PIR1	O-glycosylated protein required for cell wall stability; attached to the cell wall via beta-1,3-gluc...	2	3	15.0%	1.7E-4	34622
[View Peptides]	PEX18	Peroxin required for targeting of peroxisomal matrix proteins containing PTS2; interacts with Pex7p;...	2	2	14.8%	1.36E-4	32037
[View Peptides]	ARP4	Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling en...	5	7	14.7%	2.76E-4	54832
[View Peptides]	BMH2_YEAST	(P34730) Protein BMH2	3	3	14.7%	2.13E-4	30930
[View Peptides]	YLR243W	Putative protein of unknown function; YLR243W is an essential gene	3	3	14.7%	2.13E-4	30653
[View Peptides]	PAA1	Polyamine acetyltransferase; acetylates polyamines (e.g. putrescine, spermidine, spermine) and also ...	2	2	14.7%	2.02E-4	21947
[View Peptides]	RPN12	Subunit of the 19S regulatory particle of the 26S proteasome lid; synthetically lethal with RPT1, wh...	3	7	14.6%	4.93E-4	31919
[View Peptides]	POP6	Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursor...	2	7	14.6%	8.55E-4	18210
[View Peptides]	ADA2	Transcription coactivator, component of the ADA and SAGA transcriptional adaptor/HAT (histone acetyl...	3	3	14.5%	1.33E-4	50569
[View Peptides]	SPP1	Subunit of COMPASS (Set1C), a complex which methylates histone H3 on lysine 4 and is required in tel...	3	4	14.4%	2.19E-4	41468
[View Peptides]	YBL010C	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein colocalizes wit...	2	3	14.3%	2.07E-4	32639
[View Peptides]	FMS1	Polyamine oxidase, converts spermine to spermidine, which is required for the essential hypusination...	3	3	14.2%	1.14E-4	57806
[View Peptides]	CAC2	Component of the chromatin assembly complex (with Rlf2p and Msi1p) that assembles newly synthesized ...	4	5	14.1%	2.06E-4	51252
[View Peptides]	BUG1	Cis-golgi localized protein involved in ER to Golgi transport; forms a complex with the mammalian GR...	2	2	14.1%	1.13E-4	38295
[View Peptides]	CDC45	DNA replication initiation factor; recruited to MCM pre-RC complexes at replication origins; promote...	4	11	14.0%	3.27E-4	74249
[View Peptides]	RPA49	RNA polymerase I subunit A49	2	2	14.0%	9.3E-5	46651
[View Peptides]	INO80	ATPase, subunit of a complex containing actin and several actin-related proteins that has chromatin ...	13	15	13.9%	1.94E-4	171454
[View Peptides]	PNT1	Mitochondrial integral inner membrane protein involved in membrane insertion of C-terminus of Cox2p,...	2	2	13.9%	9.12E-5	48934
[View Peptides]	STE4	G protein beta subunit, forms a dimer with Ste18p to activate the mating signaling pathway, forms a ...	3	4	13.9%	1.82E-4	46581
[View Peptides]	SPT3	Subunit of the SAGA and SAGA-like transcriptional regulatory complexes, interacts with Spt15p to act...	3	5	13.9%	2.86E-4	38800
[View Peptides]	TRA1	Subunit of SAGA and NuA4 histone acetyltransferase complexes; interacts with acidic activators (e.g....	32	38	13.7%	1.96E-4	433182
[View Peptides]	RSE1	Protein involved in pre-mRNA splicing; component of the pre-spliceosome; associates with U2 snRNA; i...	13	29	13.7%	4.11E-4	153784
[View Peptides]	SWD2	Subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lys 4 and is involved in telo...	3	8	13.7%	4.69E-4	37122
[View Peptides]	FIT1	Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor...	3	3	13.6%	1.1E-4	52491
[View Peptides]	YJL213W	Protein of unknown function that may interact with ribosomes; periodically expressed during the yeas...	2	2	13.6%	1.17E-4	35905
[View Peptides]	YFL034W	Putative integral membrane protein that interacts with Rpp0p, which is a component of the ribosomal ...	8	8	13.5%	1.44E-4	119496
[View Peptides]	NGG1	Transcriptional regulator involved in glucose repression of Gal4p-regulated genes; component of tran...	5	13	13.5%	3.57E-4	79282
[View Peptides]	CCT2	Subunit beta of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assemb...	6	6	13.5%	2.2E-4	57203
[View Peptides]	TEF1, TEF2	Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction ...	4	5	13.5%	2.11E-4	50033
[View Peptides]	VPS41	Vacuolar membrane protein that is a subunit of the homotypic vacuole fusion and vacuole protein sort...	10	11	13.4%	2.14E-4	113412
[View Peptides]	EDC3	Non-essential conserved protein of unknown function, plays a role in mRNA decapping by specifically ...	5	30	13.4%	0.00105	61340
[View Peptides]	YHR122W	Protein of unknown function required for establishment of sister chromatid cohesion; synthetically l...	2	2	13.4%	1.67E-4	25675
[View Peptides]	RMP1	Subunit of RNase MRP, which processes pre-rRNA and has a role in cell cycle-regulated degradation of...	2	2	13.4%	1.92E-4	23619
[View Peptides]	HS74_YEAST, HSP7...	(P22202) Heat shock protein SSA4, (P22202) Heat shock protein SSA4	10	12	13.3%	3.61E-4	69520
[View Peptides]	IMP2'	Transcriptional activator involved in maintenance of ion homeostasis and protection against DNA dama...	4	5	13.3%	2.79E-4	39071
[View Peptides]	GGC1	Mitochondrial GTP/GDP transporter, essential for mitochondrial genome maintenance; has a role in mit...	2	2	13.3%	1.29E-4	33215
[View Peptides]	PAN1	Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p, associates with actin patches on th...	9	10	13.2%	1.3E-4	160266
[View Peptides]	gi\|1710847, gi\|1...	gi\|1710847\|sp\|P43612\|SA155_YEAST SIT4-associating protein SAP155, gi\|1345142\|gb\|AAC49303.1\| Sap155p	6	6	13.2%	1.16E-4	114880
[View Peptides]	DRS1	Nucleolar DEAD-box protein required for ribosome assembly and function, including synthesis of 60S r...	5	8	13.2%	2.05E-4	84843
[View Peptides]	NPA3	Essential, conserved, cytoplasmic ATPase; phosphorylated by the Pcl1p-Pho85p kinase complex	3	4	13.2%	2.0E-4	43195
[View Peptides]	YIP5	Protein that interacts with Rab GTPases, localized to late Golgi vesicles; computational analysis of...	2	2	13.2%	1.24E-4	34843
[View Peptides]	PRS2	5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase, synthesizes PRPP, which is required for nucleot...	2	4	13.2%	2.43E-4	34765
[View Peptides]	SIR3	Silencing protein that interacts with Sir2p and Sir4p, and histone H3 and H4 tails, to establish a t...	8	10	13.1%	1.97E-4	111360
[View Peptides]	gi\|1078215, gi\|5...	sp\|P38262\|SIF2_YEAST SIR4-interacting protein SIF2, gi\|476059\|emb\|CAA55606.1\| YBR0832 [Saccharomyce...	6	8	13.1%	2.89E-4	59145
[View Peptides]	VBA3	Permease of basic amino acids in the vacuolar membrane	3	3	13.1%	1.26E-4	50225
[View Peptides]	PRY1	Protein of unknown function	2	2	13.0%	1.29E-4	30634
[View Peptides]	RS3A_YEAST	(P33442) 40S ribosomal protein S1-A (RP10A)	3	3	13.0%	2.28E-4	28612
[View Peptides]	RS3B_YEAST	(P23248) 40S ribosomal protein S1-B (RP10B)	3	3	13.0%	2.28E-4	28681
[View Peptides]	SIN3	Component of the Sin3p-Rpd3p histone deacetylase complex, involved in transcriptional repression and...	15	19	12.9%	2.39E-4	174838
[View Peptides]	LCP5	Essential protein involved in maturation of 18S rRNA; depletion leads to inhibited pre-rRNA processi...	2	2	12.9%	1.08E-4	40794
[View Peptides]	GRC3	Protein of unknown function, required for cell growth and possibly involved in rRNA processing; mRNA...	4	4	12.8%	1.22E-4	72258
[View Peptides]	SDS3	Component of the Rpd3p/Sin3p deacetylase complex required for its structural integrity and catalytic...	2	2	12.8%	1.18E-4	37625
[View Peptides]	PCT1	Cholinephosphate cytidylyltransferase, also known as CTP:phosphocholine cytidylyltransferase, rate-d...	2	2	12.7%	9.1E-5	49406
[View Peptides]	VTA1	Multivesicular body (MVB) protein involved in endosomal protein sorting; regulates Vps4p activity by...	2	4	12.7%	2.34E-4	37316
[View Peptides]	G3P3_YEAST	(P00359) Glyceraldehyde-3-phosphate dehydrogenase 3 (EC 1.2.1.12) (GAPDH 3)	2	2	12.7%	1.17E-4	35615
[View Peptides]	YHL026C	Putative protein of unknown function; YHL026C is not an essential gene; in 2005 the start site was m...	2	2	12.7%	1.44E-4	30667
[View Peptides]	MCM1	Transcription factor involved in cell-type-specific transcription and pheromone response; plays a ce...	2	2	12.6%	1.35E-4	32802
[View Peptides]	SWI6	Transcription cofactor, forms complexes with DNA-binding proteins Swi4p and Mbp1p to regulate transc...	5	5	12.5%	1.2E-4	90560
[View Peptides]	TAF2	TFIID subunit (150 kDa), involved in RNA polymerase II transcription initiation	9	13	12.4%	1.78E-4	161470
[View Peptides]	SNU114	GTPase component of U5 snRNP involved in mRNA splicing via spliceosome; binds directly to U5 snRNA; ...	9	11	12.4%	2.11E-4	114041
[View Peptides]	NPL6	Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Ldb7p, and Htl1p to...	3	3	12.4%	1.33E-4	49651
[View Peptides]	PRP4	Splicing factor, component of the U4/U6-U5 snRNP complex	3	3	12.3%	1.24E-4	52442
[View Peptides]	SIP2_YEAST	(P34164) Protein SIP2 (Protein SPM2)	2	2	12.3%	9.32E-5	46273
[View Peptides]	ATG3	E2-like enzyme involved in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; plays a r...	2	2	12.3%	1.24E-4	35887
[View Peptides]	SAW1	Protein involved in Rad1p/Rad10p-dependent removal of 3'-nonhomologous tails during double-strand br...	2	2	12.3%	1.48E-4	29770
[View Peptides]	OSH2	Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members ha...	8	11	12.2%	1.65E-4	145796
[View Peptides]	NAN1	U3 snoRNP protein, component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRN...	6	12	12.2%	2.58E-4	101237
[View Peptides]	AAR2	Component of the U5 snRNP, required for splicing of U3 precursors; originally described as a splicin...	3	4	12.1%	2.17E-4	41688
[View Peptides]	PRP8	Component of the U4/U6-U5 snRNP complex, involved in the second catalytic step of splicing; mutation...	16	26	12.0%	2.08E-4	279502
[View Peptides]	TRM11	Catalytic subunit of an adoMet-dependent tRNA methyltransferase complex (Trm11p-Trm112p), required f...	2	2	12.0%	8.91E-5	50073
[View Peptides]	RPA135	RNA polymerase I second largest subunit A135	8	9	11.8%	1.44E-4	135742
[View Peptides]	CKA1	Alpha catalytic subunit of casein kinase 2, a Ser/Thr protein kinase with roles in cell growth and p...	3	7	11.8%	3.63E-4	44668
[View Peptides]	gi\|2914549, gi\|1...	gi\|88192080\|pdb\|2AL1\|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex At Ph 8.0, ...	2	4	11.7%	1.77E-4	46671
[View Peptides]	ENO2_YEAST	(P00925) Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2) (2-phospho-D-glycerate hydro-lya...	2	4	11.7%	1.77E-4	46783
[View Peptides]	ETR1_YEAST, MRF1...	(P38071) Enoyl-[acyl-carrier protein] reductase [NADPH, B-specific] (EC 1.3.1.10) (Trans-2-enoyl-CoA...	2	3	11.6%	1.56E-4	40898
[View Peptides]	SIT4	Type 2A-related serine-threonine phosphatase that functions in the G1/S transition of the mitotic cy...	3	5	11.6%	3.1E-4	35538
[View Peptides]	RS0A_YEAST	(P32905) 40S ribosomal protein S0-A (Nucleic acid-binding protein NAB1A)	2	2	11.6%	1.54E-4	27893
[View Peptides]	CDC27	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase req...	4	4	11.5%	1.02E-4	85437
[View Peptides]	RUP1	Protein involved in regulation of Rsp5p, which is an essential HECT ubiquitin ligase; has a WW domai...	5	5	11.5%	1.44E-4	75361
[View Peptides]	COG8	Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering com...	3	3	11.5%	9.54E-5	69829
[View Peptides]	GAL83	One of three possible beta-subunits of the Snf1 kinase complex, allows nuclear localization of the S...	2	2	11.5%	9.25E-5	46648
[View Peptides]	RPA190	RNA polymerase I largest subunit A190	14	18	11.4%	2.09E-4	186431
[View Peptides]	REB1	RNA polymerase I enhancer binding protein; DNA binding protein which binds to genes transcribed by b...	4	4	11.4%	9.53E-5	91874
[View Peptides]	YMC1	Mitochondrial protein, putative inner membrane transporter with a role in oleate metabolism and glut...	2	2	11.4%	1.26E-4	33376
[View Peptides]	VPS16	Subunit of the vacuole fusion and protein sorting HOPS complex and the CORVET tethering complex; par...	6	6	11.3%	1.45E-4	92741
[View Peptides]	ARK1	Serine/threonine protein kinase involved in regulation of the cortical actin cytoskeleton; involved ...	4	4	11.3%	1.21E-4	71373
[View Peptides]	CBF2	Essential kinetochore protein, component of the CBF3 multisubunit complex that binds to the CDEIII r...	5	7	11.1%	1.41E-4	111917
[View Peptides]	HOS2	Histone deacetylase required for gene activation via specific deacetylation of lysines in H3 and H4 ...	2	3	11.1%	1.28E-4	51455
[View Peptides]	MND2	Subunit of the anaphase-promoting complex (APC); necessary for maintaining sister chromatid cohesion...	2	2	11.1%	1.05E-4	42826
[View Peptides]	HSP7F_YEAST, HS7...	(P32589) Heat shock protein homolog SSE1 (Chaperone protein MSI3), (P32589) Heat shock protein homol...	5	10	11.0%	2.79E-4	77235
[View Peptides]	IPI3	Essential component of the Rix1 complex (Rix1p, Ipi1p, Ipi3p) that is required for processing of ITS...	2	2	11.0%	6.95E-5	61773
[View Peptides]	YLR049C	Putative protein of unknown function	2	2	11.0%	9.02E-5	49493
[View Peptides]	RTF1	Subunit of the RNA polymerase II-associated Paf1 complex; directly or indirectly regulates DNA-bindi...	4	8	10.9%	2.77E-4	65869
[View Peptides]	ZPR1	Essential protein with two zinc fingers, present in the nucleus of growing cells but relocates to th...	2	2	10.9%	7.94E-5	55072
[View Peptides]	GDH3	NADP(+)-dependent glutamate dehydrogenase, synthesizes glutamate from ammonia and alpha-ketoglutarat...	2	2	10.9%	8.44E-5	49627
[View Peptides]	IRR1	Subunit of the cohesin complex, which is required for sister chromatid cohesion during mitosis and m...	7	9	10.8%	1.51E-4	133009
[View Peptides]	EGT2	Glycosylphosphatidylinositol (GPI)-anchored cell wall endoglucanase required for proper cell separat...	3	3	10.8%	5.56E-5	108495
[View Peptides]	SYDC_YEAST	(P04802) Aspartyl-tRNA synthetase, cytoplasmic (EC 6.1.1.12) (Aspartate--tRNA ligase) (AspRS)	3	3	10.8%	1.04E-4	63384
[View Peptides]	MFB1	Mitochondria-associated F-box protein involved in maintenance of normal mitochondrial morphology; in...	3	5	10.8%	2.07E-4	53168
[View Peptides]	RPN10	Non-ATPase base subunit of the 19S regulatory particle (RP) of the 26S proteasome; N-terminus plays ...	2	2	10.8%	1.44E-4	29747
[View Peptides]	TBS1	Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi...	5	5	10.7%	8.82E-5	126903
[View Peptides]	NAM9	Mitochondrial ribosomal component of the small subunit	2	2	10.7%	7.94E-5	56356
[View Peptides]	CUS1	Protein required for assembly of U2 snRNP into the spliceosome, forms a complex with Hsh49p and Hsh1...	2	2	10.6%	8.85E-5	50253
[View Peptides]	YLR057W	Putative protein of unknown function; YLR050C is not an essential gene	4	5	10.5%	1.14E-4	96997
[View Peptides]	UFO1	F-box receptor protein, subunit of the Skp1-Cdc53-F-box receptor (SCF) E3 ubiquitin ligase complex; ...	5	6	10.5%	1.73E-4	76860
[View Peptides]	TFC8	One of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC); part of ...	4	4	10.5%	1.31E-4	67684
[View Peptides]	BFR2	Essential protein that is a component of 90S preribosomes; may be involved in rRNA processing; multi...	4	5	10.5%	1.81E-4	61203
[View Peptides]	VPS5	Nexin-1 homolog required for localizing membrane proteins from a prevacuolar/late endosomal compartm...	3	3	10.4%	8.58E-5	76484
[View Peptides]	VMA2	Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), a...	3	7	10.4%	2.61E-4	57749
[View Peptides]	POP5	Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursor...	2	2	10.4%	2.23E-4	19574
[View Peptides]	VBA5	Putative transporter of the Major Facilitator Superfamily (MFS); proposed role as a basic amino acid...	3	3	10.3%	9.95E-5	63361
[View Peptides]	PWP2	Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA...	5	8	10.3%	1.67E-4	103983
[View Peptides]	SFL1	Transcriptional repressor and activator; involved in repression of flocculation-related genes, and a...	3	3	10.3%	7.56E-5	83317
[View Peptides]	ATG7	Autophagy-related protein and dual specificity member of the E1 family of ubiquitin-activating enzym...	4	4	10.3%	1.23E-4	71428
[View Peptides]	RAD18	E3 ubiqutin ligase, forms heterodimer with Rad6p to monoubiquitinate PCNA-K164; heterodimer binds si...	3	3	10.3%	1.19E-4	55230
[View Peptides]	YDL233W	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	2	2	10.3%	8.43E-5	51320
[View Peptides]	gi\|49258842	gi\|49258842\|pdb\|1S1I\|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obta...	2	2	10.2%	1.07E-4	38931
[View Peptides]	RL4A_YEAST	(P10664) 60S ribosomal protein L4-A (L2A) (RP2)	2	2	10.2%	1.07E-4	38961
[View Peptides]	ZTA1	NADPH-dependent quinone reductase, GFP-tagged protein localizes to the cytoplasm and nucleus; has si...	2	2	10.2%	1.16E-4	37019
[View Peptides]	VID27	Cytoplasmic protein of unknown function; possibly involved in vacuolar protein degradation; not esse...	5	5	10.1%	1.23E-4	88846
[View Peptides]	CTI6	Protein that relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recru...	2	2	10.1%	7.63E-5	57053
[View Peptides]	MRS6	Rab escort protein, forms a complex with the Ras-like small GTPase Ypt1p that is required for the pr...	3	3	10.0%	9.6E-5	67374
[View Peptides]	RME1	Zinc finger protein involved in control of meiosis; prevents meiosis by repressing IME1 expression a...	2	5	10.0%	3.22E-4	33904
[View Peptides]	GSP2	GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear organization, RN...	2	2	10.0%	1.75E-4	24991
[View Peptides]	GSP1	Ran GTPase, GTP binding protein (mammalian Ranp homolog) involved in the maintenance of nuclear orga...	2	2	10.0%	1.76E-4	24810
[View Peptides]	YDR131C	F-box protein, substrate-specific adaptor subunit that recruits substrates to a core ubiquitination ...	3	3	9.9%	1.04E-4	65243
[View Peptides]	MKT1	Protein that forms a complex with Pbp1p that may mediate posttranscriptional regulation of HO endonu...	3	3	9.8%	6.97E-5	94494
[View Peptides]	YGR130C	Putative protein of unknown function; GFP-fusion protein localizes to the cytoplasm; possible compon...	3	4	9.8%	9.46E-5	92698
[View Peptides]	gi\|1351369, gi\|6...	gi\|662800\|gb\|AAC13785.1\| Srb10p, gi\|1351369\|sp\|P39073\|UME5_YEAST Meiotic mRNA stability protein kina...	3	3	9.8%	1.07E-4	61193
[View Peptides]	YPR045C	Protein of unknown function; involvement in splicing based on pre-mRNA accumulation defect for many ...	3	17	9.8%	6.98E-4	53719
[View Peptides]	RPN7	Essential, non-ATPase regulatory subunit of the 26S proteasome, similar to another S. cerevisiae reg...	3	3	9.8%	1.35E-4	48959
[View Peptides]	CDC12	Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recrui...	2	3	9.8%	1.42E-4	46668
[View Peptides]	SCW10	Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based ...	2	2	9.8%	9.92E-5	40469
[View Peptides]	PHO85	Cyclin-dependent kinase, with ten cyclin partners; involved in regulating the cellular response to n...	2	2	9.8%	1.27E-4	34906
[View Peptides]	RIX1	Essential component of the Rix1 complex (Rix1p, Ipi1p, Ipi3p) that is required for processing of ITS...	4	4	9.7%	1.01E-4	86667
[View Peptides]	CEP3	Essential kinetochore protein, component of the CBF3 complex that binds the CDEIII region of the cen...	3	3	9.7%	9.52E-5	71358
[View Peptides]	HEM15	Ferrochelatase, a mitochondrial inner membrane protein, catalyzes the insertion of ferrous iron into...	2	2	9.7%	9.82E-5	44596
[View Peptides]	JHD2	JmjC domain family histone demethylase specific for H3-K4 (histone H3 Lys4); removes methyl groups s...	4	4	9.6%	1.06E-4	84984
[View Peptides]	gi\|1174617	gi\|1174617\|sp\|P40413\|TCPE_YEAST T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon)	3	4	9.6%	1.4E-4	60677
[View Peptides]	GLE2	Component of the Nup82 subcomplex of the nuclear pore complex; required for polyadenylated RNA expor...	2	2	9.6%	1.06E-4	40523
[View Peptides]	MCM4	Essential helicase component of heterohexameric MCM2-7 complexes which bind pre-replication complexe...	4	4	9.5%	8.27E-5	105003
[View Peptides]	IOC3	Member of a complex (Isw1a) with Isw1p that has nucleosome-stimulated ATPase activity and represses ...	4	4	9.5%	9.81E-5	90897
[View Peptides]	SFP1	Transcription factor that controls expression of ribosome biogenesis genes in response to nutrients ...	2	2	9.5%	5.65E-5	74785
[View Peptides]	CDC40	Pre-mRNA splicing factor, important for catalytic step II of pre-mRNA splicing and plays a role in c...	2	2	9.5%	8.48E-5	52048
[View Peptides]	STM1	Protein required for optimal translation under nutrient stress; perturbs association of Yef3p with r...	2	2	9.5%	1.41E-4	29995
[View Peptides]	SFB2	Component of the Sec23p-Sfb2p heterodimer of the COPII vesicle coat, required for cargo selection du...	6	6	9.4%	1.32E-4	98943
[View Peptides]	YMR031C	Protein of unknown function with similarity to Ykl050cp and Uso1p; the authentic, non-tagged protein...	4	4	9.4%	9.16E-5	93345
[View Peptides]	SGV1	Cyclin (Bur2p)-dependent protein kinase that functions in transcriptional regulation; phosphorylates...	3	3	9.4%	8.81E-5	74239
[View Peptides]	RSC4	Component of the RSC chromatin remodeling complex; found in close proximity to nucleosomal DNA; disp...	3	3	9.4%	9.26E-5	72276
[View Peptides]	SNU71	Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counte...	2	2	9.4%	6.22E-5	71383
[View Peptides]	PPT1	Protein serine/threonine phosphatase with similarity to human phosphatase PP5; present in both the n...	2	2	9.4%	7.52E-5	57995
[View Peptides]	CCP1	Mitochondrial cytochrome-c peroxidase; degrades reactive oxygen species in mitochondria, involved in...	2	2	9.4%	1.07E-4	40353
[View Peptides]	GCS1	ADP-ribosylation factor GTPase activating protein (ARF GAP), involved in ER-Golgi transport; shares ...	2	3	9.4%	1.64E-4	39296
[View Peptides]	DOS2	Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the cytopla...	3	5	9.4%	3.11E-4	35964
[View Peptides]	YGR160W	[DUBIOUS] Dubious open reading frame unlikely to encode a functional protein, based on available exp...	2	4	9.4%	3.8E-4	22179
[View Peptides]	MED2	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form ...	2	2	9.3%	8.95E-5	47718
[View Peptides]	RRI2	Subunit of the COP9 signalosome (CSN) complex that cleaves the ubiquitin-like protein Nedd8 from SCF...	2	2	9.1%	5.98E-5	76389
[View Peptides]	SRB8	Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form ...	8	8	9.0%	1.08E-4	166860
[View Peptides]	NOP58	Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the ...	3	5	9.0%	1.89E-4	56956
[View Peptides]	CWH41	Processing alpha glucosidase I, ER type II integral membrane N-glycoprotein involved in assembly of ...	4	4	8.9%	9.27E-5	96507
[View Peptides]	OSH6	Member of an oxysterol-binding protein family with overlapping, redundant functions in sterol metabo...	2	2	8.9%	8.61E-5	51588
[View Peptides]	CTR1	High-affinity copper transporter of the plasma membrane, mediates nearly all copper uptake under low...	2	3	8.9%	1.43E-4	44442
[View Peptides]	PUG1	Plasma membrane protein with roles in the uptake of protoprophyrin IX and the efflux of heme; expres...	2	4	8.9%	2.55E-4	33733
[View Peptides]	VAM6	Vacuolar protein that plays a critical role in the tethering steps of vacuolar membrane fusion by fa...	5	6	8.8%	1.1E-4	122881
[View Peptides]	YHR113W	Cytoplasmic aspartyl aminopeptidase; cleaves unblocked N-terminal acidic amino acid residues from pe...	2	2	8.8%	7.88E-5	54174
[View Peptides]	IVY1	Phospholipid-binding protein that interacts with both Ypt7p and Vps33p, may partially counteract the...	2	2	8.8%	8.52E-5	49976
[View Peptides]	TOR2	PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that regulates growth i...	12	22	8.7%	1.72E-4	281509
[View Peptides]	CDC4	F-box protein required for G1/S and G2/M transition, associates with Skp1p and Cdc53p to form a comp...	5	6	8.7%	1.49E-4	86090
[View Peptides]	YDR049W	Zinc finger protein; putative transcription factor that may interact with proteins involved in histo...	5	6	8.7%	1.83E-4	72733
[View Peptides]	KEL1	Protein required for proper cell fusion and cell morphology; functions in a complex with Kel2p to ne...	6	8	8.6%	1.33E-4	131094
[View Peptides]	SET1	Histone methyltransferase, subunit of the COMPASS (Set1C) complex which methylates histone H3 on lys...	7	12	8.6%	2.14E-4	123912
[View Peptides]	RGA1	GTPase-activating protein for the polarity-establishment protein Cdc42p; implicated in control of se...	4	4	8.6%	7.66E-5	112831
[View Peptides]	gi\|1169907, gi\|9...	gi\|902793\|gb\|AAA91646.1\| Glg1p, sp\|P36143\|GLG1_YEAST Glycogen synthesis initiator protein GLG1	2	2	8.6%	6.24E-5	69912
[View Peptides]	TFB2	Subunit of TFIIH and nucleotide excision repair factor 3 complexes, involved in transcription initia...	2	2	8.6%	7.52E-5	58535
[View Peptides]	DMA2	Protein involved in ubiquitination; plays a role in regulating spindle position and orientation; fun...	3	3	8.6%	1.11E-4	57584
[View Peptides]	SRV2	CAP (cyclase-associated protein) subunit of adenylyl cyclase complex; N-terminus binds adenylyl cycl...	2	2	8.6%	7.34E-5	57522
[View Peptides]	CDC1	Putative lipid phosphatase of the endoplasmic reticulum; shows Mn2+ dependence and may affect Ca2+ s...	3	3	8.6%	1.18E-4	57147
[View Peptides]	ATG17	Scaffold protein responsible for phagophore assembly site organization; regulatory subunit of an aut...	2	2	8.6%	9.25E-5	48656
[View Peptides]	APL2	Beta-adaptin, large subunit of the clathrin-associated protein (AP-1) complex; binds clathrin; invol...	4	5	8.5%	1.33E-4	81869
[View Peptides]	THI6	Bifunctional enzyme with thiamine-phosphate pyrophosphorylase and 4-methyl-5-beta-hydroxyethylthiazo...	2	3	8.5%	1.07E-4	58059
[View Peptides]	MRI1	5'-methylthioribose-1-phosphate isomerase; catalyzes the isomerization of 5-methylthioribose-1-phosp...	2	3	8.5%	1.41E-4	45020
[View Peptides]	SNT1	Subunit of the Set3C deacetylase complex that interacts directly with the Set3C subunit, Sif2p; puta...	5	5	8.4%	7.87E-5	138397
[View Peptides]	YCG1	Subunit of the condensin complex; required for establishment and maintenance of chromosome condensat...	5	5	8.4%	9.32E-5	117851
[View Peptides]	JIP5	Essential protein required for biogenesis of the large ribosomal subunit; interacts with proteins in...	3	3	8.4%	1.13E-4	57517
[View Peptides]	URN1	Putative protein of unknown function containing WW and FF domains; overexpression causes accumulatio...	2	3	8.4%	1.24E-4	54139
[View Peptides]	ARP9	Component of both the SWI/SNF and RSC chromatin remodeling complexes; actin-related protein involved...	3	3	8.4%	1.24E-4	53074
[View Peptides]	RRP15	Nucleolar protein, constituent of pre-60S ribosomal particles; required for proper processing of the...	2	4	8.4%	3.09E-4	28212
[View Peptides]	YNL311C	Protein of unknown function that may interact with ribosomes, based on co-purification experiments; ...	3	4	8.3%	1.01E-4	88942
[View Peptides]	NUP82	Nucleoporin, subunit of the nuclear pore complex (NPC); forms a subcomplex with Gle2p, Nup159p, Nsp1...	4	6	8.3%	1.62E-4	82085
[View Peptides]	ISW2	ATP-dependent DNA translocase involved in chromatin remodeling; ATPase component that, with Itc1p, f...	5	6	8.2%	1.03E-4	130327
[View Peptides]	IRC5	Putative ATPase containing the DEAD/H helicase-related sequence motif; null mutant displays increase...	4	8	8.2%	1.98E-4	88730
[View Peptides]	VIK1	Protein that forms a complex with Kar3p at the spindle pole body, possible regulator of Kar3p functi...	3	3	8.2%	8.95E-5	75730
[View Peptides]	TEC1	Transcription factor required for full Ty1 expression, Ty1-mediated gene activation, and haploid inv...	2	2	8.2%	7.94E-5	55158
[View Peptides]	PBA1	Protein involved in 20S proteasome assembly; forms a heterodimer with Add66p that binds to proteasom...	2	2	8.2%	1.75E-4	24266
[View Peptides]	YJR028W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	8.2%	8.77E-5	49112
[View Peptides]	YDR261C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; in YDRCTY1-3 TYB is mutant and probably no...	2	2	8.2%	8.77E-5	49009
[View Peptides]	YLR227W-A, YML04...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	8.2%	8.77E-5	48993
[View Peptides]	YBR012W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	8.2%	8.77E-5	49068
[View Peptides]	YML045W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	8.2%	8.77E-5	49122
[View Peptides]	YER159C-A, YDR31...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	8.2%	8.77E-5	49129
[View Peptides]	YGR027W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	8.2%	8.77E-5	49056
[View Peptides]	YDR098C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	8.2%	8.77E-5	49057
[View Peptides]	YDR365W-A, YPL25...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	8.2%	8.77E-5	48953
[View Peptides]	GPI1	Membrane protein involved in the synthesis of N-acetylglucosaminyl phosphatidylinositol (GlcNAc-PI),...	2	2	8.0%	6.34E-5	70354
[View Peptides]	YLR108C	Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus...	2	2	8.0%	7.96E-5	55601
[View Peptides]	SPS22	Protein of unknown function, redundant with Sps2p for the organization of the beta-glucan layer of t...	2	2	8.0%	8.33E-5	52008
[View Peptides]	PTK1	Putative serine/threonine protein kinase that regulates spermine uptake; involved in polyamine trans...	2	2	7.9%	6.89E-5	63178
[View Peptides]	KTR5	Putative mannosyltransferase involved in protein glycosylation; member of the KRE2/MNT1 mannosyltran...	2	2	7.9%	7.39E-5	61728
[View Peptides]	SNG1	Protein involved in resistance to nitrosoguanidine (MNNG) and 6-azauracil (6-AU); expression is regu...	2	2	7.9%	7.05E-5	61294
[View Peptides]	RRT12	Probable subtilisin-family protease with a role in formation of the dityrosine layer of spore walls;...	2	2	7.9%	7.86E-5	55068
[View Peptides]	gi\|3645900, gi\|6...	gi\|6320955\|ref\|NP_011034.1\| Transcription factor required for flocculation, diploid filamentous grow...	2	2	7.8%	4.83E-5	86835
[View Peptides]	RGD2	GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p	2	5	7.8%	1.35E-4	82208
[View Peptides]	BUD14	Protein involved in bud-site selection, Bud14p-Glc7p complex is a cortical regulator of dynein; inhi...	4	4	7.8%	1.09E-4	79063
[View Peptides]	MON1	Protein required for fusion of cvt-vesicles and autophagosomes with the vacuole; associates, as a co...	2	2	7.8%	5.99E-5	73494
[View Peptides]	RAD7	Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad16p) during nucleo...	2	2	7.8%	6.83E-5	63778
[View Peptides]	MCH4	Protein with similarity to mammalian monocarboxylate permeases, which are involved in transport of m...	2	2	7.8%	7.7E-5	54707
[View Peptides]	TFC6	One of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC); part of ...	3	3	7.7%	8.61E-5	74709
[View Peptides]	MET30	F-box protein containing five copies of the WD40 motif, controls cell cycle function, sulfur metabol...	3	3	7.7%	9.04E-5	72835
[View Peptides]	ASF2	Anti-silencing protein that causes derepression of silent loci when overexpressed	2	2	7.6%	7.35E-5	59347
[View Peptides]	CMR2	Putative protein of unknown function; deletion causes sensitivity to unfolded protein response-induc...	9	11	7.5%	1.29E-4	186906
[View Peptides]	RSC1	Component of the RSC chromatin remodeling complex; required for expression of mid-late sporulation-s...	3	3	7.5%	6.24E-5	106669
[View Peptides]	SNX41	Sorting nexin, involved in the retrieval of late-Golgi SNAREs from the post-Golgi endosome to the tr...	2	3	7.5%	9.26E-5	70741
[View Peptides]	RSC8	Component of the RSC chromatin remodeling complex; essential for viability and mitotic growth; homol...	3	6	7.5%	2.08E-4	63168
[View Peptides]	ADE4	Phosphoribosylpyrophosphate amidotransferase (PRPPAT; amidophosphoribosyltransferase), catalyzes fir...	2	2	7.5%	7.57E-5	56719
[View Peptides]	BDH2	Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by consti...	3	3	7.4%	1.39E-4	46099
[View Peptides]	HOS4	Subunit of the Set3 complex, which is a meiotic-specific repressor of sporulation specific genes tha...	4	4	7.3%	7.13E-5	123556
[View Peptides]	ADE13	Adenylosuccinate lyase, catalyzes two steps in the 'de novo' purine nucleotide biosynthetic pathway;...	2	2	7.3%	8.01E-5	54511
[View Peptides]	YDR170W-A	Retrotransposon TYA Gag gene; Gag is a nucleocapsid protein that is the structural constituent of vi...	2	2	7.3%	8.77E-5	49445
[View Peptides]	SWD3	Essential subunit of the COMPASS (Set1C) complex, which methylates histone H3 on lysine 4 and is req...	2	3	7.3%	1.84E-4	34754
[View Peptides]	RSC6	Component of the RSC chromatin remodeling complex; essential for mitotic growth; homolog of SWI/SNF ...	3	3	7.2%	1.2E-4	54165
[View Peptides]	YDL073W	Putative protein of unknown function; YDL073W is not an essential gene	3	73	7.1%	0.00143	113891
[View Peptides]	GTB1	Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p, involved in removal of two gl...	2	2	7.1%	5.5E-5	79908
[View Peptides]	RGD1	GTPase-activating protein (RhoGAP) for Rho3p and Rho4p, possibly involved in control of actin cytosk...	3	3	7.1%	8.69E-5	74619
[View Peptides]	TFC1	One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part...	3	3	7.1%	8.92E-5	73554
[View Peptides]	GCN5	Histone acetyltransferase, acetylates N-terminal lysines on histones H2B and H3; catalytic subunit o...	2	2	7.1%	8.79E-5	51069
[View Peptides]	SAP185	Protein that forms a complex with the Sit4p protein phosphatase and is required for its function; me...	4	5	7.0%	9.12E-5	121403
[View Peptides]	UGA3	Transcriptional activator necessary for gamma-aminobutyrate (GABA)-dependent induction of GABA genes...	2	3	7.0%	1.1E-4	61224
[View Peptides]	PRP24	Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling	2	3	7.0%	1.3E-4	50849
[View Peptides]	DLT1	Protein of unknown function, mutant sensitive to 6-azauracil (6AU) and mycophenolic acid (MPA)	2	2	7.0%	1.13E-4	39187
[View Peptides]	CYK3	SH3-domain protein located in the mother-bud neck and the cytokinetic actin ring; mutant phenotype a...	2	4	6.9%	8.72E-5	100621
[View Peptides]	MDM32	Mitochondrial inner membrane protein with similarity to Mdm31p, required for normal mitochondrial mo...	2	2	6.9%	5.91E-5	75555
[View Peptides]	TAF12	Subunit (61/68 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiat...	2	3	6.9%	1.07E-4	61073
[View Peptides]	TOD6	PAC motif binding protein involved in rRNA and ribosome biogenesis; subunit of the RPD3L histone dea...	2	2	6.9%	7.35E-5	59226
[View Peptides]	VAC14	Protein involved in regulated synthesis of PtdIns(3,5)P(2), in control of trafficking of some protei...	4	4	6.8%	8.77E-5	99773
[View Peptides]	AKR2	Ankyrin repeat-containing protein similar to Akr1p; member of a family of putative palmitoyltransfer...	2	2	6.8%	5.15E-5	85236
[View Peptides]	RAD61	Subunit of a complex (Scc3p, Pds5p, Rad61p) that inhibits sister chromatid cohesion; inhibited by Ec...	3	3	6.8%	8.95E-5	74722
[View Peptides]	GCD2	Delta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for...	2	2	6.8%	5.93E-5	70852
[View Peptides]	MEP2	Ammonium permease involved in regulation of pseudohyphal growth; belongs to a ubiquitous family of c...	2	2	6.8%	7.73E-5	53401
[View Peptides]	ITC1	Component of the ATP-dependent Isw2p-Itc1p chromatin remodeling complex, required for repression of ...	4	4	6.7%	6.11E-5	145642
[View Peptides]	SNF5	Subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; function...	3	3	6.7%	6.4E-5	102556
[View Peptides]	NUP100	Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a re...	2	2	6.7%	4.02E-5	99988
[View Peptides]	gi\|2340994	gi\|2340994\|gb\|AAB67523.1\| Sen1p [Saccharomyces cerevisiae]	2	2	6.7%	5.1E-5	84888
[View Peptides]	ITR2	Myo-inositol transporter with strong similarity to the major myo-inositol transporter Itr1p, member ...	2	2	6.7%	6.31E-5	67042
[View Peptides]	GLE1	Cytoplasmic nucleoporin required for polyadenylated RNA export but not for protein import; component...	2	2	6.7%	7.17E-5	62073
[View Peptides]	MAS1	Smaller subunit of the mitochondrial processing protease (MPP), essential processing enzyme that cle...	2	2	6.7%	8.35E-5	51084
[View Peptides]	gi\|453570, gi\|585212	gi\|585212\|sp\|P37303.1\|GLY1_YEAST RecName: Full=Low specificity L-threonine aldolase; Short=Low speci...	2	2	6.7%	9.97E-5	42797
[View Peptides]	ISW1	Member of the imitation-switch (ISWI) class of ATP-dependent chromatin remodeling complexes; ATPase ...	4	6	6.6%	1.03E-4	131102
[View Peptides]	RSC58	Component of the RSC chromatin remodeling complex; RSC functions in transcriptional regulation and e...	2	3	6.6%	1.15E-4	57795
[View Peptides]	PEP3	Component of CORVET tethering complex; vacuolar peripheral membrane protein that promotes vesicular ...	4	6	6.5%	1.26E-4	107398
[View Peptides]	SPO22	Meiosis-specific protein essential for chromosome synapsis, involved in completion of nuclear divisi...	2	2	6.5%	4.36E-5	102357
[View Peptides]	YSH1	Putative endoribonuclease, subunit of the mRNA cleavage and polyadenylation specificity complex; req...	2	2	6.5%	4.95E-5	87674
[View Peptides]	HMI1	Mitochondrial inner membrane localized ATP-dependent DNA helicase, required for the maintenance of t...	3	8	6.5%	2.19E-4	80576
[View Peptides]	PSO2	Nuclease required for a post-incision step in the repair of DNA single and double-strand breaks that...	2	3	6.5%	8.76E-5	76399
[View Peptides]	SWI3	Subunit of the SWI/SNF chromatin remodeling complex, which regulates transcription by remodeling chr...	2	2	6.4%	4.68E-5	92926
[View Peptides]	TFG1	TFIIF (Transcription Factor II) largest subunit; involved in both transcription initiation and elong...	2	2	6.4%	5.25E-5	82194
[View Peptides]	RNT1	RNAase III; involved in rDNA transcription and rRNA processing; also cleaves a stem-loop structure a...	2	2	6.4%	8.19E-5	54071
[View Peptides]	gi\|399005, gi\|3324	gi\|399005\|sp\|Q01574.1\|ACS1_YEAST RecName: Full=Acetyl-coenzyme A synthetase 1; AltName: Full=Acetate...	2	2	6.3%	5.41E-5	79169
[View Peptides]	LEU4	Alpha-isopropylmalate synthase (2-isopropylmalate synthase); the main isozyme responsible for the fi...	2	2	6.3%	6.23E-5	68409
[View Peptides]	MCM10	Essential chromatin-associated protein involved in the initiation of DNA replication; required for t...	2	2	6.3%	6.76E-5	65815
[View Peptides]	CAN1	Plasma membrane arginine permease, requires phosphatidyl ethanolamine (PE) for localization, exclusi...	2	2	6.3%	6.54E-5	65786
[View Peptides]	APC1	Largest subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein li...	5	5	6.2%	5.52E-5	196143
[View Peptides]	APC2	Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase req...	3	3	6.2%	6.79E-5	99978
[View Peptides]	TEL2	Essential DNA-binding protein specific to single-stranded yeast telomeric DNA repeats, required for ...	2	21	6.2%	5.89E-4	78687
[View Peptides]	YLR446W	Putative protein of unknown function with similarity to hexokinases; transcript is upregulated durin...	2	2	6.2%	8.91E-5	48969
[View Peptides]	TIF4632	Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that al...	2	2	6.1%	4.22E-5	103899
[View Peptides]	DSL1	Peripheral membrane protein needed for Golgi-to-ER retrograde traffic; forms a complex with Sec39p a...	2	3	6.1%	7.68E-5	88072
[View Peptides]	BEM2	Rho GTPase activating protein (RhoGAP) involved in the control of cytoskeleton organization and cell...	7	9	6.0%	8.01E-5	245428
[View Peptides]	ESC1	Protein localized to the nuclear periphery, involved in telomeric silencing; interacts with PAD4-dom...	4	4	6.0%	4.65E-5	187137
[View Peptides]	gi\|2315262	gi\|2315262\|emb\|CAA99092.1\| IRA2 [Saccharomyces cerevisiae]	2	3	6.0%	5.28E-5	126813
[View Peptides]	JSN1	Member of the Puf family of RNA-binding proteins, interacts with mRNAs encoding membrane-associated ...	3	3	6.0%	5.31E-5	120374
[View Peptides]	CEX1	Cytoplasmic component of the nuclear aminoacylation-dependent tRNA export pathway; interacts with nu...	3	4	6.0%	1.01E-4	84769
[View Peptides]	PBP1	Component of glucose deprivation induced stress granules, involved in P-body-dependent granule assem...	2	2	6.0%	5.34E-5	78782
[View Peptides]	VPS17	Subunit of the membrane-associated retromer complex essential for endosome-to-Golgi retrograde prote...	2	2	6.0%	7.0E-5	63204
[View Peptides]	SVL3	Protein of unknown function, mutant phenotype suggests a potential role in vacuolar function; green ...	2	2	5.9%	4.68E-5	92144
[View Peptides]	TSL1	Large subunit of trehalose 6-phosphate synthase (Tps1p)/phosphatase (Tps2p) complex, which converts ...	3	3	5.8%	5.27E-5	123018
[View Peptides]	SSL2	Component of the holoenzyme form of RNA polymerase transcription factor TFIIH, has DNA-dependent ATP...	2	2	5.8%	4.58E-5	95341
[View Peptides]	RAD24	Checkpoint protein, involved in the activation of the DNA damage and meiotic pachytene checkpoints; ...	2	3	5.8%	8.78E-5	75727
[View Peptides]	PKH2	Serine/threonine protein kinase involved in sphingolipid-mediated signaling pathway that controls en...	3	4	5.7%	7.14E-5	121660
[View Peptides]	TRM2	tRNA methyltransferase, 5-methylates the uridine residue at position 54 of tRNAs and may also have a...	2	2	5.7%	6.25E-5	70288
[View Peptides]	SIR2	Conserved NAD+ dependent histone deacetylase of the Sirtuin family involved in regulation of lifespa...	2	2	5.7%	6.87E-5	63262
[View Peptides]	AGP3	Low-affinity amino acid permease, may act to supply the cell with amino acids as nitrogen source in ...	2	2	5.7%	6.92E-5	61052
[View Peptides]	PIK1	Phosphatidylinositol 4-kinase; catalyzes first step in the biosynthesis of phosphatidylinositol-4,5-...	3	8	5.6%	1.45E-4	119923
[View Peptides]	SIZ1	SUMO/Smt3 ligase that promotes the attachment of sumo (Smt3p; small ubiquitin-related modifier) to p...	3	3	5.6%	6.4E-5	100796
[View Peptides]	YIL169C	Putative protein of unknown function; serine/threonine rich and highly similar to YOL155C, a putativ...	2	2	5.6%	3.88E-5	99736
[View Peptides]	PUF3	Protein of the mitochondrial outer surface, links the Arp2/3 complex with the mitochore during anter...	2	3	5.6%	6.59E-5	98068
[View Peptides]	KAP123	Karyopherin beta, mediates nuclear import of ribosomal proteins prior to assembly into ribosomes and...	3	3	5.5%	5.2E-5	122601
[View Peptides]	ESC2	Protein involved in silencing; may recruit or stabilize Sir proteins; role in Rad51-dependent homolo...	2	2	5.5%	8.46E-5	52542
[View Peptides]	EAF1	Component of the NuA4 histone acetyltransferase complex; acts as a platform for assembly of NuA4 sub...	2	2	5.4%	3.93E-5	112502
[View Peptides]	ATG1	Protein ser/thr kinase required for vesicle formation in autophagy and the cytoplasm-to-vacuole targ...	3	3	5.4%	6.45E-5	101717
[View Peptides]	MNN1	Alpha-1,3-mannosyltransferase, integral membrane glycoprotein of the Golgi complex, required for add...	2	2	5.4%	5.06E-5	88529
[View Peptides]	TOF2	Protein required for rDNA silencing and mitotic rDNA condensation; stimulates Cdc14p phosphatase act...	2	2	5.4%	5.01E-5	86366
[View Peptides]	DNA2	Tripartite DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease,...	3	5	5.3%	6.34E-5	171694
[View Peptides]	ECM21	Protein involved in regulating the endocytosis of plasma membrane proteins; identified as a substrat...	4	4	5.3%	7.17E-5	119345
[View Peptides]	KHA1	Putative K+/H+ antiporter with a probable role in intracellular cation homeostasis, localized to Gol...	2	3	5.3%	6.63E-5	97111
[View Peptides]	SET3	Defining member of the SET3 histone deacetylase complex which is a meiosis-specific repressor of spo...	2	4	5.3%	1.03E-4	85480
[View Peptides]	YNL095C	Putative protein of unknown function predicted to contain a transmembrane domain; YNL095C is not an ...	2	4	5.3%	1.2E-4	71196
[View Peptides]	ACK1	Protein that functions upstream of Pkc1p in the cell wall integrity pathway; GFP-fusion protein expr...	2	2	5.3%	6.19E-5	69371
[View Peptides]	PRI2	Subunit of DNA primase, which is required for DNA synthesis and double-strand break repair	2	2	5.3%	7.31E-5	62263
[View Peptides]	gi\|2326814	gi\|2326814\|emb\|CAA99286.1\| unnamed protein product [Saccharomyces cerevisiae]	2	2	5.3%	9.67E-5	46221
[View Peptides]	BRR2	RNA-dependent ATPase RNA helicase (DEIH box); required for disruption of U4/U6 base-pairing in nativ...	5	8	5.2%	7.14E-5	246183
[View Peptides]	POL1	Catalytic subunit of the DNA polymerase I alpha-primase complex, required for the initiation of DNA ...	3	3	5.2%	3.94E-5	166809
[View Peptides]	EFT2, EFT1	Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein s...	2	3	5.2%	6.87E-5	93289
[View Peptides]	SEC23	GTPase-activating protein, stimulates the GTPase activity of Sar1p; component of the Sec23p-Sec24p h...	2	3	5.2%	7.54E-5	85385
[View Peptides]	PEP7	Multivalent adaptor protein that facilitates vesicle-mediated vacuolar protein sorting by ensuring h...	2	3	5.2%	1.12E-4	59443
[View Peptides]	GCN1	Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn20p; proposed to stimulate ...	6	6	5.1%	4.33E-5	296697
[View Peptides]	SMC4	Subunit of the condensin complex; reorganizes chromosomes during cell division; forms a complex with...	4	4	5.1%	5.44E-5	162188
[View Peptides]	NET1	Core subunit of the RENT complex, which is a complex involved in nucleolar silencing and telophase e...	2	2	5.1%	3.25E-5	128531
[View Peptides]	YEL047C	Soluble fumarate reductase, required with isoenzyme Osm1p for anaerobic growth; may interact with ri...	2	2	5.1%	8.21E-5	50844
[View Peptides]	POL2	Catalytic subunit of DNA polymerase (II) epsilon, a chromosomal DNA replication polymerase that exhi...	6	7	5.0%	6.08E-5	255669
[View Peptides]	PSD2	Phosphatidylserine decarboxylase of the Golgi and vacuolar membranes, converts phosphatidylserine to...	3	4	5.0%	6.78E-5	130065
[View Peptides]	KSP1	Ser/thr protein kinase; nuclear translocation required for haploid filamentous growth; regulates fil...	4	6	5.0%	1.13E-4	117082
[View Peptides]	gi\|130196, gi\|41...	pir\|\|A29457 PIF1 protein precursor - yeast (Saccharomyces cerevisiae), gi\|4178\|emb\|CAA28953.1\| unnam...	2	2	5.0%	4.5E-5	97481
[View Peptides]	ADE5,7	Bifunctional enzyme of the 'de novo' purine nucleotide biosynthetic pathway, contains aminoimidazole...	2	2	5.0%	4.81E-5	86068
[View Peptides]	TOK1	Outward-rectifier potassium channel of the plasma membrane with two pore domains in tandem, each of ...	2	2	4.9%	5.58E-5	77408
[View Peptides]	YFR016C	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	3	3	4.8%	4.69E-5	137698
[View Peptides]	RIA1	Cytoplasmic GTPase involved in biogenesis of the 60S ribosome; has similarity to translation elongat...	3	3	4.8%	5.21E-5	124464
[View Peptides]	TFC4	One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part...	4	4	4.8%	7.53E-5	120229
[View Peptides]	GIS1	JmjC domain-containing histone demethylase; transcription factor involved in the expression of genes...	2	2	4.8%	4.32E-5	99481
[View Peptides]	LEU9	Alpha-isopropylmalate synthase II (2-isopropylmalate synthase), catalyzes the first step in the leuc...	2	2	4.8%	6.39E-5	67200
[View Peptides]	BNI1	Formin, nucleates the formation of linear actin filaments, involved in cell processes such as buddin...	4	4	4.7%	3.95E-5	219701
[View Peptides]	CTF18	Subunit of a complex with Ctf8p that shares some subunits with Replication Factor C and is required ...	2	2	4.7%	5.21E-5	84373
[View Peptides]	POL12	B subunit of DNA polymerase alpha-primase complex, required for initiation of DNA replication during...	2	2	4.7%	5.47E-5	78774
[View Peptides]	YMR317W	Putative protein of unknown function with some similarity to sialidase from Trypanosoma; YMR317W is ...	2	2	4.6%	3.39E-5	113071
[View Peptides]	FIG4	Phosphatidylinositol 3,5-bisphosphate (PtdIns[3,5]P) phosphatase; required for efficient mating and ...	2	5	4.6%	1.1E-4	101746
[View Peptides]	BUD27	Protein involved in bud-site selection, nutrient signaling, and gene expression controlled by TOR ki...	2	2	4.6%	4.85E-5	91422
[View Peptides]	YND1	Apyrase with wide substrate specificity, involved in preventing the inhibition of glycosylation by h...	2	2	4.6%	6.13E-5	71852
[View Peptides]	MKS1	Pleiotropic negative transcriptional regulator involved in Ras-CAMP and lysine biosynthetic pathways...	2	3	4.6%	9.91E-5	65643
[View Peptides]	SEC24	Component of the Sec23p-Sec24p heterodimer of the COPII vesicle coat, required for cargo selection d...	2	2	4.5%	4.17E-5	103635
[View Peptides]	COG6	Component of the conserved oligomeric Golgi complex (Cog1p through Cog8p), a cytosolic tethering com...	2	2	4.5%	4.6E-5	96976
[View Peptides]	PAN2	Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tai...	3	3	4.4%	5.19E-5	127039
[View Peptides]	YBR235W	Putative ion transporter, similar to mammalian electroneutral Na(+)-(K+)-C1- cotransporter family; Y...	2	2	4.4%	3.45E-5	123998
[View Peptides]	YPR089W	Protein of unknown function; exhibits genetic interaction with ERG11 and protein-protein interaction...	2	2	4.4%	4.35E-5	102578
[View Peptides]	HSF1	Trimeric heat shock transcription factor, activates multiple genes in response to stresses that incl...	2	2	4.4%	4.63E-5	93282
[View Peptides]	NPR1	Protein kinase that stabilizes several plasma membrane amino acid transporters by antagonizing their...	2	2	4.4%	4.88E-5	85990
[View Peptides]	YOR088W	YOR088W SGDID:S0005614, Chr XV from 488286-489734	2	2	4.4%	8.01E-5	55730
[View Peptides]	PDRB_YEAST, PDR1...	(P40550) ATP-dependent permease PDR11, (P40550) ATP-dependent permease PDR11	3	3	4.3%	4.11E-5	160406
[View Peptides]	CIN8	Kinesin motor protein involved in mitotic spindle assembly and chromosome segregation	2	2	4.3%	3.72E-5	117999
[View Peptides]	ASE1	Mitotic spindle midzone localized microtubule-associated protein (MAP) family member; required for s...	2	2	4.3%	4.36E-5	101624
[View Peptides]	SAP1	Putative ATPase of the AAA family, interacts with the Sin1p transcriptional repressor in the two-hyb...	2	2	4.3%	4.3E-5	100332
[View Peptides]	CFT2	Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, poly...	2	2	4.3%	4.49E-5	96254
[View Peptides]	YKL187C	Putative protein of unknown function; the authentic, non-tagged protein is detected in a phosphoryla...	2	2	4.3%	5.15E-5	81033
[View Peptides]	RLM1	MADS-box transcription factor, component of the protein kinase C-mediated MAP kinase pathway involve...	2	2	4.3%	5.71E-5	73484
[View Peptides]	CAF130	Part of the evolutionarily-conserved CCR4-NOT transcriptional regulatory complex involved in control...	2	2	4.2%	3.44E-5	128780
[View Peptides]	RGC1	Pleckstrin homology domain containing protein proposed to function as a glycerol channel activator; ...	2	2	4.2%	3.56E-5	120395
[View Peptides]	CWH43	Putative sensor/transporter protein involved in cell wall biogenesis; contains 14-16 transmembrane s...	2	2	4.2%	4.05E-5	107883
[View Peptides]	ATG2	Peripheral membrane protein required for vesicle formation during autophagy, pexophagy, and the cyto...	3	4	4.1%	4.85E-5	178413
[View Peptides]	TFC3	Largest of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); ...	2	2	4.1%	3.33E-5	132108
[View Peptides]	MTR4	ATP-dependent 3'-5' RNA helicase, involved in nuclear RNA processing and degredation both as a compo...	2	2	4.1%	3.6E-5	122055
[View Peptides]	VPS3	Component of CORVET tethering complex; cytoplasmic protein required for the sorting and processing o...	2	4	4.1%	7.63E-5	116922
[View Peptides]	PUF4	Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that ...	2	2	4.1%	4.35E-5	97798
[View Peptides]	GDH2	NAD(+)-dependent glutamate dehydrogenase, degrades glutamate to ammonia and alpha-ketoglutarate; exp...	2	2	4.0%	3.53E-5	124332
[View Peptides]	gi\|626825, gi\|45...	gi\|730723\|sp\|P11792\|SCH9_YEAST Serine/threonine-protein kinase SCH9, pir\|\|S48986 probable protein ki...	2	2	4.0%	4.69E-5	91680
[View Peptides]	KEL3	Cytoplasmic protein of unknown function	2	3	4.0%	8.89E-5	75433
[View Peptides]	MYO1	Type II myosin heavy chain, required for wild-type cytokinesis and cell separation; localizes to the...	4	4	3.9%	4.0E-5	223634
[View Peptides]	HSL1	Nim1p-related protein kinase that regulates the morphogenesis and septin checkpoints; associates wit...	2	2	3.9%	2.54E-5	169592
[View Peptides]	TRS120	One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates...	2	4	3.9%	5.99E-5	147662
[View Peptides]	VAC7	Integral vacuolar membrane protein involved in vacuole inheritance and morphology; activates Fab1p k...	2	2	3.9%	3.31E-5	128140
[View Peptides]	ADY3	Protein required for spore wall formation, thought to mediate assembly of a Don1p-containing structu...	2	3	3.9%	7.33E-5	91740
[View Peptides]	ENT2	Epsin-like protein required for endocytosis and actin patch assembly and functionally redundant with...	2	2	3.9%	6.3E-5	71807
[View Peptides]	UBR1	E3 ubiquitin ligase (N-recognin), forms heterodimer with Rad6p to ubiquitinate substrates in the N-e...	3	3	3.8%	2.97E-5	224836
[View Peptides]	CHC1	Clathrin heavy chain, subunit of the major coat protein involved in intracellular protein transport ...	3	3	3.8%	3.5E-5	187233
[View Peptides]	ECM30	Non-essential protein of unknown function	2	2	3.8%	3.03E-5	145052
[View Peptides]	TAF1	TFIID subunit (145 kDa), involved in RNA polymerase II transcription initiation; possesses in vitro ...	2	2	3.8%	3.62E-5	120696
[View Peptides]	STE20	Cdc42p-activated signal transducing kinase of the PAK (p21-activated kinase) family; involved in phe...	2	2	3.8%	4.11E-5	102362
[View Peptides]	BUD7	Member of the ChAPs family of proteins (Chs5p-Arf1p-binding proteins: Bch1p, Bch2p, Bud7p, Chs6p), t...	2	2	3.8%	5.17E-5	84830
[View Peptides]	YJL225C	Putative protein of unknown function; similarity to DNA helicases that are also encoded within subte...	3	5	3.7%	5.49E-5	197564
[View Peptides]	YIL177C	Putative protein of unknown function; similarity to DNA helicases that are encoded within subtelomer...	3	5	3.7%	5.49E-5	197511
[View Peptides]	YSP1	Mitochondrial protein with a potential role in promoting mitochondrial fragmentation during programm...	2	2	3.7%	3.14E-5	143583
[View Peptides]	RRP12	Protein required for export of the ribosomal subunits; associates with the RNA components of the pre...	2	2	3.7%	3.14E-5	137508
[View Peptides]	ROM1	GDP/GTP exchange protein (GEP) for Rho1p; mutations are synthetically lethal with mutations in rom2,...	2	2	3.7%	3.34E-5	131392
[View Peptides]	FLO10	Lectin-like protein with similarity to Flo1p, thought to be involved in flocculation	2	3	3.7%	4.95E-5	122164
[View Peptides]	ULP2	Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins, plays a role in chromosome cohesion ...	2	3	3.7%	5.6E-5	116882
[View Peptides]	KGD1	Component of the mitochondrial alpha-ketoglutarate dehydrogenase complex, which catalyzes a key step...	2	2	3.7%	3.81E-5	114416
[View Peptides]	ECM22	Sterol regulatory element binding protein, regulates transcription of sterol biosynthetic genes; con...	2	2	3.7%	4.74E-5	89286
[View Peptides]	YRF1-8, YRF1-5, ...	One of several telomeric Y' element-encoded DNA helicases, known as Y'-Help1 (Y'-HELicase Protein 1)...	3	5	3.6%	5.37E-5	203780
[View Peptides]	FAS2	Alpha subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty ...	2	2	3.6%	2.05E-5	206945
[View Peptides]	FIG2	Cell wall adhesin, expressed specifically during mating; may be involved in maintenance of cell wall...	2	3	3.6%	3.6E-5	166036
[View Peptides]	SMC2	Subunit of the condensin complex; essential SMC chromosomal ATPase family member that forms a comple...	2	2	3.6%	3.3E-5	133928
[View Peptides]	TMA108	Protein that associates with ribosomes; putative metalloprotease	2	4	3.6%	8.16E-5	107723
[View Peptides]	TBF1	Telobox-containing general regulatory factor; binds to TTAGGG repeats within subtelomeric anti-silen...	2	4	3.6%	1.37E-4	62824
[View Peptides]	RIM15	Glucose-repressible protein kinase involved in signal transduction during cell proliferation in resp...	3	3	3.4%	3.27E-5	196530
[View Peptides]	STU1	Component of the mitotic spindle that binds to interpolar microtubules via its association with beta...	2	17	3.4%	2.17E-4	174176
[View Peptides]	TSC11	Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p), a membrane-associated complex that regulates...	3	3	3.4%	4.05E-5	164368
[View Peptides]	MHP1	Microtubule-associated protein involved in assembly and stabilization of microtubules; overproductio...	3	5	3.4%	6.9E-5	155207
[View Peptides]	YPL216W	Putative protein of unknown function; YPL216W is not an essential gene	2	2	3.4%	3.5E-5	128133
[View Peptides]	YPR097W	Protein that contains a Phox homology (PX) domain and binds phosphoinositides; the authentic, non-ta...	2	2	3.4%	3.6E-5	123054
[View Peptides]	PUF2	Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that ...	2	2	3.4%	3.59E-5	119508
[View Peptides]	HMG1	One of two isozymes of HMG-CoA reductase that catalyzes the conversion of HMG-CoA to mevalonate, whi...	2	2	3.4%	3.66E-5	115625
[View Peptides]	SWI1	Subunit of the SWI/SNF chromatin remodeling complex, which regulates transcription by remodeling chr...	2	3	3.3%	4.41E-5	147937
[View Peptides]	SMC3	Subunit of the multiprotein cohesin complex required for sister chromatid cohesion in mitotic cells;...	3	3	3.3%	4.71E-5	141336
[View Peptides]	FLO9	Lectin-like protein with similarity to Flo1p, thought to be expressed and involved in flocculation	2	2	3.3%	2.92E-5	138072
[View Peptides]	NEW1	ATP binding cassette protein that cosediments with polysomes and is required for biogenesis of the s...	2	3	3.3%	4.84E-5	134331
[View Peptides]	YRM1	Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; par...	2	2	3.3%	4.91E-5	91084
[View Peptides]	AIM9	Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi...	2	2	3.3%	6.15E-5	72414
[View Peptides]	GRX4	Hydroperoxide and superoxide-radical responsive glutathione-dependent oxidoreductase; monothiol glut...	2	4	3.3%	3.16E-4	27493
[View Peptides]	STT4	Phosphatidylinositol-4-kinase that functions in the Pkc1p protein kinase pathway; required for norma...	3	3	3.2%	3.05E-5	214605
[View Peptides]	MDS3	Protein with an N-terminal kelch-like domain, putative negative regulator of early meiotic gene expr...	2	2	3.2%	2.6E-5	167074
[View Peptides]	gi\|17377416	gi\|17377416\|sp\|P51979\|HFM1_YEAST ATP-dependent DNA helicase MER3 (HFM1 protein)	2	2	3.2%	3.25E-5	135100
[View Peptides]	JJJ1	Co-chaperone that stimulates the ATPase activity of Ssa1p, required for a late step of ribosome biog...	2	2	3.2%	6.54E-5	68783
[View Peptides]	gi\|171762, gi\|124890	gi\|171762\|gb\|AAA34710.1\| IRA2 protein (IRA2) [Saccharomyces cerevisiae], gi\|124890\|sp\|P19158\|IRA2_YE...	4	6	3.1%	3.76E-5	351638
[View Peptides]	MLP2	Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the...	2	2	3.1%	2.3E-5	195140
[View Peptides]	NUP192	Essential structural subunit of the nuclear pore complex (NPC), localizes to the nuclear periphery o...	2	4	3.1%	4.59E-5	191534
[View Peptides]	STH1	ATPase component of the RSC chromatin remodeling complex; required for expression of early meiotic g...	3	3	3.1%	4.26E-5	156742
[View Peptides]	ECM16	Essential DEAH-box ATP-dependent RNA helicase specific to the U3 snoRNP, predominantly nucleolar in ...	2	2	3.1%	3.05E-5	144954
[View Peptides]	SGD1	Essential nuclear protein, required for biogenesis of the small ribosomal subunit; has a possible ro...	2	2	3.1%	4.29E-5	102853
[View Peptides]	VMR1	Protein of unknown function that may interact with ribosomes, based on co-purification experiments; ...	2	2	3.0%	2.42E-5	180925
[View Peptides]	TRM3	2'-O-ribose methyltransferase, catalyzes the ribose methylation of the guanosine nucleotide at posit...	2	3	3.0%	4.03E-5	165047
[View Peptides]	YHR080C	Protein of unknown function that may interact with ribosomes, based on co-purification experiments; ...	2	2	3.0%	2.87E-5	149679
[View Peptides]	MYO5	One of two type I myosins; contains proline-rich tail homology 2 (TH2) and SH3 domains; MYO5 deletio...	2	2	3.0%	3.17E-5	136899
[View Peptides]	FKS3	Protein involved in spore wall assembly, has similarity to 1,3-beta-D-glucan synthase catalytic subu...	2	2	2.9%	2.16E-5	207482
[View Peptides]	MYO2	One of two type V myosin motors (along with MYO4) involved in actin-based transport of cargos; requi...	3	3	2.9%	3.68E-5	180679
[View Peptides]	BEM3	Rho GTPase activating protein (RhoGAP) involved in control of the cytoskeleton organization; targets...	2	2	2.9%	3.42E-5	124913
[View Peptides]	SRO7	Effector of Rab GTPase Sec4p, forms a complex with Sec4p and t-SNARE Sec9p; involved in exocytosis a...	2	2	2.9%	3.74E-5	114513
[View Peptides]	gi\|6686356, gi\|2...	gi\|6686356\|sp\|P47098.2\|YJ11B_YEAST RecName: Full=Transposon Ty1-JR1 Gag-Pol polyprotein; AltName: Fu...	3	3	2.8%	3.3E-5	198615
[View Peptides]	YER138C	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	3	3	2.8%	3.3E-5	198561
[View Peptides]	ECM5	Non-essential protein of unknown function, contains ATP/GTP-binding site motif A; null mutant exhibi...	2	3	2.8%	4.1E-5	162700
[View Peptides]	YML133C	Putative protein of unknown function with similarity to helicases; the authentic, non-tagged protein...	2	4	2.8%	5.62E-5	155553
[View Peptides]	CDC60	Cytosolic leucyl tRNA synthetase, ligates leucine to the appropriate tRNA	2	2	2.8%	3.54E-5	124141
[View Peptides]	PTP3	Phosphotyrosine-specific protein phosphatase involved in the inactivation of mitogen-activated prote...	2	2	2.8%	4.16E-5	105251
[View Peptides]	DUR1,2	Urea amidolyase, contains both urea carboxylase and allophanate hydrolase activities, degrades urea ...	2	2	2.7%	2.1E-5	201830
[View Peptides]	gi\|1945315, gi\|1...	gi\|1945316\|emb\|CAA97035.1\| TY1B [Saccharomyces cerevisiae], gi\|1945315\|emb\|CAA97027.1\| TY1B [Sacchar...	2	2	2.7%	2.2E-5	198621
[View Peptides]	IML1	Protein of unknown function, green fluorescent protein (GFP)-fusion protein localizes to the vacuola...	2	2	2.7%	2.44E-5	181948
[View Peptides]	SWI4	DNA binding component of the SBF complex (Swi4p-Swi6p), a transcriptional activator that in concert ...	2	2	2.7%	3.53E-5	123806
[View Peptides]	YKL050C	Protein of unknown function; the YKL050W protein is a target of the SCFCdc4 ubiquitin ligase complex...	2	3	2.7%	6.28E-5	103144
[View Peptides]	VID22	Glycosylated integral membrane protein localized to the plasma membrane; plays a role in fructose-1,...	2	2	2.7%	4.28E-5	102499
[View Peptides]	ACC1	Acetyl-CoA carboxylase, biotin containing enzyme that catalyzes the carboxylation of acetyl-CoA to f...	3	3	2.6%	2.59E-5	250351
[View Peptides]	YRF1-2	Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking ...	2	4	2.6%	4.59E-5	190502
[View Peptides]	gi\|914198, gi\|11...	gi\|914198\|gb\|AAB34124.1\| myosin I homolog/MYO3 gene product [Saccharomyces cerevisiae], gi\|1171092\|s...	2	2	2.6%	3.03E-5	142780
[View Peptides]	PIM1	ATP-dependent Lon protease, involved in degradation of misfolded proteins in mitochondria; required ...	2	2	2.6%	3.41E-5	127112
[View Peptides]	YNL284C-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	2	2	2.5%	2.2E-5	198997
[View Peptides]	RKR1	Nuclear RING domain protein with functional connections to chromatin modification; may interact with...	2	2	2.5%	2.47E-5	180185
[View Peptides]	SWR1	Swi2/Snf2-related ATPase that is the structural component of the SWR1 complex, which exchanges histo...	2	2	2.5%	2.55E-5	174530
[View Peptides]	TCB3	Lipid-binding protein, localized to the bud via specific mRNA transport; non-tagged protein detected...	2	3	2.5%	3.75E-5	171075
[View Peptides]	YPL009C	Protein of unknown function; may interact with ribosomes, based on co-purification experiments; gree...	2	2	2.5%	3.72E-5	119069
[View Peptides]	YRF1-6	Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking ...	2	4	2.4%	4.15E-5	211098
[View Peptides]	YRF1-3, YRF1-7	Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking ...	2	4	2.4%	4.15E-5	211114
[View Peptides]	SEN1	Presumed helicase required for RNA polymerase II transcription termination and processing of RNAs; h...	2	2	2.3%	1.73E-5	252495
[View Peptides]	TOR1	PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that controls growth in...	4	4	2.3%	3.12E-5	281138
[View Peptides]	YCF1	Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detox...	2	2	2.2%	2.55E-5	171120
[View Peptides]	PYC2	Pyruvate carboxylase isoform, cytoplasmic enzyme that converts pyruvate to oxaloacetate; highly simi...	2	3	2.2%	4.91E-5	130167
[View Peptides]	YDR261C-D	Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional	2	2	2.2%	2.41E-5	181660
[View Peptides]	YOL103W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	2	2	2.1%	2.2E-5	198613
[View Peptides]	SGS1	Nucleolar DNA helicase of the RecQ family involved in genome integrity maintenance; regulates chromo...	2	2	2.1%	2.67E-5	163837
[View Peptides]	EF3A_YEAST	(P16521) Elongation factor 3A (EF-3A) (EF-3) (Translation elongation factor 3A) (Eukaryotic elongati...	2	2	2.1%	3.7E-5	115862
[View Peptides]	gi\|2120067, gi\|7...	gi\|74627262\|sp\|Q12088.1\|YL11B_YEAST RecName: Full=Transposon Ty1-LR1 Gag-Pol polyprotein; AltName: F...	2	2	2.1%	2.2E-5	198460
[View Peptides]	gi\|2131099, gi\|6...	gi\|6686357\|sp\|P47100\|YJZ9_YEAST Transposon Ty1 protein B, gi\|2131099\|emb\|CAA89556.1\| TY1B [Saccharom...	2	2	2.1%	2.2E-5	198592
[View Peptides]	YBR012W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	2	2	2.1%	2.2E-5	198868
[View Peptides]	YER160C	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	2	2	2.1%	2.2E-5	198568
[View Peptides]	YGR027W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	2	2	2.1%	2.2E-5	198656
[View Peptides]	YHR214C-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	2	2	2.0%	2.15E-5	202816
[View Peptides]	YTA7	Protein that localizes to chromatin and has a role in regulation of histone gene expression; has a b...	2	2	2.0%	2.8E-5	157406
[View Peptides]	AKR1	Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone ...	2	2	2.0%	5.05E-5	85840
[View Peptides]	CYR1	Adenylate cyclase, required for cAMP production and cAMP-dependent protein kinase signaling; the cAM...	2	2	1.9%	1.9E-5	227832
[View Peptides]	CDC25	Membrane bound guanine nucleotide exchange factor (GEF or GDP-release factor); indirectly regulates ...	3	3	1.9%	3.64E-5	179091
[View Peptides]	ARO1	Pentafunctional arom protein, catalyzes steps 2 through 6 in the biosynthesis of chorismate, which i...	2	2	1.9%	2.43E-5	174754
[View Peptides]	MMS22	Protein that acts with Mms1p in a repair pathway that may be involved in resolving replication inter...	2	2	1.9%	2.65E-5	167682
[View Peptides]	TOM1	E3 ubiquitin ligase of the hect-domain class; has a role in mRNA export from the nucleus and may reg...	3	3	1.7%	1.77E-5	374186
[View Peptides]	FMP27	Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi...	2	2	1.7%	1.47E-5	303478
[View Peptides]	SNT2	DNA binding protein with similarity to the S. pombe Snt2 protein; computational analysis suggests a ...	2	2	1.7%	2.75E-5	163203
[View Peptides]	BLM10	Proteasome activator subunit; found in association with core particles, with and without the 19S reg...	2	2	1.6%	2.14E-5	207614
[View Peptides]	DYN1	Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation;...	3	3	1.5%	1.41E-5	471351
[View Peptides]	MEC1	Genome integrity checkpoint protein and PI kinase superfamily member; signal transducer required for...	2	2	1.5%	1.63E-5	273340
[View Peptides]	YKL105C	Putative protein of unknown function	2	2	1.5%	3.41E-5	125593
[View Peptides]	IRA1	GTPase-activating protein that negatively regulates RAS by converting it from the GTP- to the GDP-bo...	2	2	1.4%	1.25E-5	350980
[View Peptides]	SSK2	MAP kinase kinase kinase of the HOG1 mitogen-activated signaling pathway; interacts with Ssk1p, lead...	2	2	1.3%	2.44E-5	180527
[View Peptides]	NUM1	Protein required for nuclear migration, localizes to the mother cell cortex and the bud tip; may med...	2	2	1.2%	1.4E-5	313032
[View Peptides]	VPS13	Protein of unknown function; heterooligomeric or homooligomeric complex; peripherally associated wit...	2	2	1.0%	1.23E-5	357850

View Mass Spectrometry Run