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Protein Overview: RPN12

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Riffle et al. (2010) (Unpublished Data) ECM29 GSG1 NAS6 OSH7 POL4 RPN1 RPN10 RPN11 RPN12 RPN13 RPN2 RPN3 RPN5 RPN6 RPN7 RPN8 RPN9 RPT1 RPT2 RPT3 RPT4 RPT5 RPT6 SEC18 SEM1 SLX5 SPG5 SWA2 TOD6 UBP6
View Details (MIPS) Mewes HW, et al. (2004) NAS6 RPN1 RPN10 RPN11 RPN12 RPN2 RPN3 RPN5 RPN6 RPN7 RPN8 RPN9 RPT1 RPT2 RPT3 RPT4 RPT5 RPT6
View Details Krogan NJ, et al. (2006) CSI1 CSN9 ERV46 FPR2 HUL5 IQG1 MOT1 MPT5 NAS6 NMD3 NPT1 PCI8 PEP1 PST1 PUS9 RPN1 RPN10 RPN11 RPN12 RPN13 RPN14 RPN2 RPN5 RPN6 RPN7 RPN8 RPN9 RPT1 RPT2 RPT3 RPT4 RPT5 RPT6 RRI1 RRI2 SEC18 SEM1 SKP1 SPG5 SPO77 SQT1 SWA2 TCB2 TIP41 TOD6 TOR2 TSR4 UBP6 YEN1 YKL027W YMR258C YNL022C YPR003C YPT52
View Details Gavin AC, et al. (2006) ECM29 RPN1 RPN10 RPN11 RPN12 RPN13 RPN5 RPN6 RPN7 RPN8 RPN9 RPT1
View Details Gavin AC, et al. (2002) ACC1 BDF2 BLM10 CCT8 CDC55 CDC6 CKB1 CLU1 CPA2 DNA2 DYN1 ECM29 ECM5 FDH1 GCN20 GFA1 GLY1 GUS1 HAT1 HAT2 HHF1, HHF2 HIF1 HSM3 ICL1 ILV1 IML1 KAP123 KAP95 KRE33 LIP2 LYS12 MAC1 MDN1 MEC1 MIS1 MLH2 MPH1 MRPL3 MRPS28 MSB1 MSH2 MSH6 NAS6 NIP1 NMD5 PFK1 PGK1 PRE1 PRE10 PRE2 PRE3 PRE4 PRE5 PRE6 PRE7 PRE8 PRE9 PRO1 PRT1 PSA1 PSD2 PSE1 PSH1 PUP3 RAD23 RAD34 RAD4 RAD52 RFA1 RFA2 RGR1 RPA135 RPB2 RPC40 RPG1 RPN10 RPN11 RPN12 RPN13 RPN3 RPN5 RPN6 RPN7 RPN8 RPN9 RPT1 RPT2 RPT3 RPT4 RPT5 RPT6 RSC3 SAM1 SCL1 SEC27 SMC3 SRO7 SSL1 TCB1 TEL1 TFA1 TFB1 TFB4 TIF1, TIF2 TSA1 TSC11 TUB3 UBP6 URA7 USO1 UTP20 VAS1 VTH2 YFL006W YFR006W YOL098C YPR077C
View Details Ho Y, et al. (2002) ACC1 ADR1 APA1 ARP2 ATP3 AVO1 BZZ1 CCT3 CCT5 CLU1 COP1 CPA2 CPR6 CYS4 DEF1 DHH1 DPB2 EMP24 FOL2 FUN12 GAL2 GAL7 GAR1 GPH1 HTB1 HXT7 IDH1 IDH2 ILV2 KGD1 KRE6 LAS17 LHS1 LSC1 LSM2 LSM8 LST8 LYS12 MDN1 MET16 MKK2 MKT1 NAS6 NOG2 NPA3 PDX1 PEP1 PHO84 PHO85 PHO86 POR1 PUF3 QCR2 RNQ1 RNR1 RNR3 RPN1 RPN11 RPN12 RPN14 RPN3 RPN5 RPN6 RPN7 RPN8 RPN9 RPT1 RPT2 RPT3 RPT4 RPT5 RRP3 RRP42 RVS167 SIP1 SIS1 SLA1 SLC1 SLX1 SMB1 SQT1 SRP54 STI1 TEM1 TFC7 TIF6 UBC12 VMA6 VMA8 YBT1 YER077C YGL117W YGR266W YHM2 YKR051W YKU80 YLR271W YML020W YNL134C YPR003C
View Details Qiu et al. (2008) NAS6 PRE1 PRE10 PRE2 PRE3 PRE5 PRE7 PRE8 PRE9 PUP1 PUP2 RPN1 RPN10 RPN11 RPN12 RPN13 RPN2 RPN3 RPN5 RPN6 RPN7 RPN8 RPN9 RPT1 RPT2 RPT3 RPT4 RPT5 RPT6 SCL1 UBP6

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data RPN12 Huh WK, et al. (2003)
View Data RPN12 and NOP56 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..94] deduced N/A Confident ab initio structure predictions are available.
2 View Details [95..274] MSA 4.035977 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • binding
  • 2.76236644111948 bayes_pls_golite062009
  • hydrolase activity
  • 2.62777210765927 bayes_pls_golite062009
  • protein binding
  • 1.5114863464349 bayes_pls_golite062009
  • structural constituent of ribosome
  • 1.48815906385664 bayes_pls_golite062009
  • nucleic acid binding
  • 1.08079130332447 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 1.06350696248374 bayes_pls_golite062009
  • transcription repressor activity
  • 0.700922242779288 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.224432853777564 bayes_pls_golite062009
  • DNA binding
  • 0.180353635969032 bayes_pls_golite062009
  • transcription regulator activity
  • 0.147335771550418 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
  • 0.142921675412538 bayes_pls_golite062009
  • small conjugating protein ligase activity
  • 0.124542865343065 bayes_pls_golite062009
    2 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle