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Protein Overview: PRT1

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Riffle et al. (2010) (Unpublished Data) FUN12 GCD11 HCR1 NIP1 PRT1 RPG1 RPS11A, RPS11B RPS4B, RPS4A RPS8B, RPS8A SUI1 SUI2 SUI3 TIF34 TIF35 TIF5
View Details (MIPS) Mewes HW, et al. (2004) GCD10 NIP1 PRT1 RPG1 SUI1 TIF34 TIF35
View Details Krogan NJ, et al. (2006) ADE8 CHZ1 ECM2 HCR1 HEM12 KAP122 NIP1 PRT1 RPG1 SUI1 SYH1 TIF34 TIF35 TIF5 YOR052C
View Details Gavin AC, et al. (2006) FUN12 HCR1 NIP1 PRT1 RLI1 RPG1 TIF34 TIF35 TIF5
View Details Gavin AC, et al. (2002) ADE13 ARC15 ARC18 ARC19 ARC35 ARC40 ARP2 ARP3 ARX1 ASC1 ATG9 BDF2 BEM2 BMS1 BRX1 BUD20 CAB3 CBF5 CCT5 CCT8 CDC55 CHD1 CIC1 CKA1 CKA2 CKB1 CKB2 CLU1 CYR1 CYS4 DBP10 DBP9 DCP2 DRS1 DYN1 EBP2 ECM5 ERB1 FPR4 FUN12 GCN1 GLT1 GLY1 HAS1 HAT1 HAT2 HCR1 HDA1 HER1 HHF1, HHF2 HIF1 HIS3 HOT1 HSM3 ICL1 IML1 INP2 IPI1 IPI3 IST2 ISW1 ISW2 KAP123 KRE33 KTR5 LHP1 LIP2 LOC1 LSG1 MAC1 MAK21 MAK5 MDN1 MIS1 MRT4 MSB1 NAP1 NIP1 NIP7 NMD3 NMD5 NOC2 NOC3 NOG1 NOG2 NOP1 NOP12 NOP15 NOP16 NOP2 NOP4 NOP56 NOP7 NSA1 NSA2 NUG1 PFK1 PRO1 PRT1 PSD2 PSE1 PSH1 PUF6 REI1 RET1 RIC1 RIX1 RIX7 RLI1 RLP24 RLP7 RPA135 RPA190 RPC40 RPF1 RPF2 RPG1 RPN12 RPN3 RPN6 RPN8 RPN9 RPP2B RPT2 RPT3 RPT5 RPT6 RRP1 RRP12 RSA3 RSA4 RSC3 RTR1 RVB2 SAM1 SDA1 SEC7 SKI2 SNU13 SPB1 SPB4 SPT16 SPT5 SSA4 SSF1 SUA7 SUI1 SUI2 SUI3 SUP45 TEL1 TIF34 TIF35 TIF5 TIF6 TSC11 TUB3 URB1 USO1 UTP10 UTP20 UTP22 UTP6 VPS1 VTH2 YFR006W YGL036W YGR102C YPR077C YTA7 YTM1
View Details Qiu et al. (2008) CLU1 FUN12 GCD11 HCR1 NIP1 PRT1 RPG1 SUI1 SUI2 SUI3 TIF34 TIF35 TIF5 YGR054W

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)
View Run MLP2 #06 Alpha Factor Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run None Entered #17 Mitotic Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data PRT1 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..160] PSI-BLAST 16.69897 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
2 View Details [161..679] PSI-BLAST 37.522879 Actin interacting protein 1
3 View Details [680..763] deduced N/A No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 4.50438526063124 bayes_pls_golite062009
  • translation initiation factor activity
  • 3.27900316559423 bayes_pls_golite062009
  • nucleic acid binding
  • 3.03004688154589 bayes_pls_golite062009
  • mRNA binding
  • 2.92795844574986 bayes_pls_golite062009
  • binding
  • 2.80563734517858 bayes_pls_golite062009
  • structural molecule activity
  • 2.78501986457503 bayes_pls_golite062009
  • 1.49431666307335 bayes_pls_golite062009
  • protein binding
  • 1.02232785292059 bayes_pls_golite062009
  • single-stranded RNA binding
  • 0.90573796517364 bayes_pls_golite062009
  • RNA cap binding
  • 0.847034036194541 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.32812362201346 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
    2
    Term Confidence Notes
  • structural molecule activity
  • 2.6914565031145 bayes_pls_golite062009
  • translation initiation factor activity
  • 2.29806492548141 bayes_pls_golite062009
  • binding
  • 1.58733371663063 bayes_pls_golite062009
  • RNA binding
  • 1.54614730254863 bayes_pls_golite062009
  • 1.53488375271101 bayes_pls_golite062009
  • protein binding
  • 1.11897341394404 bayes_pls_golite062009
  • snoRNA binding
  • 0.503568445551651 bayes_pls_golite062009
  • nucleic acid binding
  • 0.417970425588631 bayes_pls_golite062009
    3 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle