| Protein: | PRT1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 763 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRT1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..763] | [1..763] |
|
|
0.0 | [39..762] | [147..808] |
|
|
0.0 | [39..762] | [147..808] |
|
|
0.0 | [105..742] | [1194..1751] |
|
|
0.0 | [39..756] | [136..789] |
|
|
0.0 | [24..763] | [5..710] |
|
|
0.0 | [103..679] | [914..1479] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MKNFLPRTLK NIYELYFNNI SVHSIVSRNT QLKRSKIIQM TTETFEDIKL EDIPVDDIDF 60
61 SDLEEQYKVT EEFNFDQYIV VNGAPVIPSA KVPVLKKALT SLFSKAGKVV NMEFPIDEAT 120
121 GKTKGFLFVE CGSMNDAKKI IKSFHGKRLD LKHRLFLYTM
|
| Detection Method: |  |
| Confidence: | 16.69897 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.50438526063124 | bayes_pls_golite062009 |
| translation initiation factor activity | 3.27900316559423 | bayes_pls_golite062009 |
| nucleic acid binding | 3.03004688154589 | bayes_pls_golite062009 |
| mRNA binding | 2.92795844574986 | bayes_pls_golite062009 |
| binding | 2.80563734517858 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| 1.49431666307335 | bayes_pls_golite062009 | |
| protein binding | 1.02232785292059 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.90573796517364 | bayes_pls_golite062009 |
| RNA cap binding | 0.847034036194541 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.32812362201346 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
|
Region A: Residues: [161-679] |
1 11 21 31 41 51
| | | | | |
1 KDVERYNSDD FDTEFREPDM PTFVPSSSLK SWLMDDKVRD QFVLQDDVKT SVFWNSMFNE 60
61 EDSLVESREN WSTNYVRFSP KGTYLFSYHQ QGVTAWGGPN FDRLRRFYHP DVRNSSVSPN 120
121 EKYLVTFSTE PIIVEEDNEF SPFTKKNEGH QLCIWDIASG LLMATFPVIK SPYLKWPLVR 180
181 WSYNDKYCAR MVGDSLIVHD ATKNFMPLEA KALKPSGIRD FSFAPEGVKL QPFRNGDEPS 240
241 VLLAYWTPET NNSACTATIA EVPRGRVLKT VNLVQVSNVT LHWQNQAEFL CFNVERHTKS 300
301 GKTQFSNLQI CRLTERDIPV EKVELKDSVF EFGWEPHGNR FVTISVHEVA DMNYAIPANT 360
361 IRFYAPETKE KTDVIKRWSL VKEIPKTFAN TVSWSPAGRF VVVGALVGPN MRRSDLQFYD 420
421 MDYPGEKNIN DNNDVSASLK DVAHPTYSAA TNITWDPSGR YVTAWSSSLK HKVEHGYKIF 480
481 NIAGNLVKED IIAGFKNFAW RPRPASILSN AERKKVRKN
|
| Detection Method: | |
| Confidence: | 37.522879 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural molecule activity | 2.6914565031145 | bayes_pls_golite062009 |
| translation initiation factor activity | 2.29806492548141 | bayes_pls_golite062009 |
| binding | 1.58733371663063 | bayes_pls_golite062009 |
| RNA binding | 1.54614730254863 | bayes_pls_golite062009 |
| 1.53488375271101 | bayes_pls_golite062009 | |
| protein binding | 1.11897341394404 | bayes_pls_golite062009 |
| snoRNA binding | 0.503568445551651 | bayes_pls_golite062009 |
| nucleic acid binding | 0.417970425588631 | bayes_pls_golite062009 |
|
Region A: Residues: [680-763] |
1 11 21 31 41 51
| | | | | |
1 LREWSAQFEE QDAMEADTAM RDLILHQREL LKQWTEYREK IGQEMEKSMN FKIFDVQPED 60
61 ASDDFTTIEE IVEEVLEETK EKVE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
