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Protein Overview: EIF3B_ARATH

General Information:
Name(s) found: EIF3B_ARATH [Swiss-Prot]
Description(s) found:
Found 15 descriptions.
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  • Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 712 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    cytosol [IDA]
    eukaryotic translation initiation factor 3 complex [ISS]
    Biological Process: translational initiation [IEA]
    Molecular Function: nucleic acid binding [ISS]
    translation initiation factor activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVVDIDARA AKLGIDWSQV NFDSIQLPPG EDFGIESDDE AVYQDDQSEF DTGFGNIIVV  60
   61 DHLPVVPKEK FEKLEGVVKK IYNQLGVIKE NGLWMPVDPD TKMTLGYCFI EFNTPQEAQN 120
  121 AKEKSHGYKL DKSHIFAVNM FDDFDRLMNV KEEWEPPQAR PYVPGENLQK WLTDEKARDQ 180
  181 LVIRSGPDTE VFWNDTRQKA PEPVHKRPYW TESYVQWSPL GTYLVTLHKQ GAAVWGGADT 240
  241 FTRLMRYQHS MVKLVDFSPG EKYLVTYHSQ EPSNPRDASK VEIKVFDVRT GRMMRDFKGS 300
  301 ADEFSIGGPG GVAGASWPVF RWAGGKDDKY FAKLSKNTIS VYETETFSLI DKKSMKVDNV 360
  361 VDICWSPTDS ILSLFVPEQG GGNQPAKVAL VQIPSKVELR QKNLFSVSDC KMYWQSSGEY 420
  421 LAVKVDRYTK TKKSTYSGFE LFRIKERDIP IEVLELDNKN DKIIAFAWEP KGHRFAVIHG 480
  481 DQPRPDVSFY SMKTAQNTGR VSKLATLKAK QANALFWSPT GKYIILAGLK GFNGQLEFFN 540
  541 VDELETMATA EHFMATDIEW DPTGRYVATA VTSVHEMENG FTIWSFNGIM LYRILKDHFF 600
  601 QLAWRPRPPS FLTAEKEEEI AKTLKKYSKK YEAEDQDVSL LLSEQDREKR KALKEEWEKW 660
  661 VMQWKSLHEE EKLVRQNLRD GEVSDVEEDE YEAKEVEFED LIDVTEEIVQ ES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] FFAS03 2.08 No description for 2nlwA was found.
    2 View Details [103..630] PSI-BLAST 27.522879 Actin interacting protein 1
    3 View Details [631..712] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural molecule activity
    		•  2.6914565031145 bayes_pls_golite062009
  • translation initiation factor activity
    		•  2.29806492548141 bayes_pls_golite062009
  • binding
    		•  1.58733371663063 bayes_pls_golite062009
  • RNA binding
    		•  1.54614730254863 bayes_pls_golite062009
    		• 1.53488375271101 bayes_pls_golite062009
  • protein binding
    		•  1.11897341394404 bayes_pls_golite062009
  • snoRNA binding
    		•  0.503568445551651 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.417970425588631 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle