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Protein Overview: NIP7

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Riffle et al. (2010) (Unpublished Data) ARX1 BRX1 CIC1 DBP10 DBP9 DRS1 EBP2 ERB1 FPR4 HAS1 MAK21 MAK5 MRT4 NIP7 NOC2 NOC3 NOG1 NOG2 NOP1 NOP15 NOP2 NOP4 NOP7 NSA1 NUG1 PUF6 RIX1 RIX7 RLP7 RPF1 RPL1A, RPL1B RPL25 RRP1 SPB1 SPB4 TIF6 URB1 YTM1
View Details Krogan NJ, et al. (2006) BUD22 CIC1 DBP6 EFG1 FRE3 GIS2 HAS1 MAK21 NIP7 NOB1 NOC2 NOC3 NOP1 NOP2 NOP8 PUS7 RRP5 RSA3 SBP1 SFA1 SSQ1 YGR272C YMR034C YRF1-8, YRF1-5, ...
View Details Gavin AC, et al. (2006) ARX1 FPR4 MRT4 NIP7 NOG1 NOG2 NOP2 NSA2 NUG1 RPF2 SDA1 TIF6
View Details Gavin AC, et al. (2002) ARO1 ARX1 BEM2 BMS1 BRX1 BUD20 CIC1 CLU1 CYR1 CYS4 DBP10 DBP9 DCP2 DRS1 EBP2 EMP24 ERB1 ERP1 ERP2 ERV25 FKS1 FPR4 GCN1 HAS1 HDA1 HER1 HHF1, HHF2 HIS3 INP2 IPI1 IPI3 KAP123 KRE33 LHP1 LOC1 LSG1 MAK21 MAK5 MDN1 MIS1 MRT4 NAP1 NIP1 NIP7 NMD3 NOC2 NOC3 NOG1 NOG2 NOP1 NOP12 NOP15 NOP16 NOP2 NOP4 NOP56 NOP7 NSA1 NSA2 NUG1 PHB1 PRT1 PUF6 REI1 RIX1 RIX7 RLP24 RLP7 RPA135 RPA190 RPF1 RPF2 RPG1 RPP2B RPT6 RRP1 RRP12 RSA3 RSA4 RTR1 SDA1 SEC7 SKI2 SNU13 SPB1 SPB4 SSF1 TIF6 TUB3 URB1 UTP10 UTP20 UTP22 YGL036W YTM1
View Details Ho Y, et al. (2002) BMS1 BRX1 CDC53 CIC1 CKB1 COF1 COX6 CTF4 DBP10 DED81 DIA2 ENP1 FET4 FPR3 GAR1 HHF1, HHF2 HTB1 HTB2 ILS1 INO4 KRE33 KRI1 LST4 MAM33 MCM2 MCM3 MCM5 NIP7 NMD3 NOC2 NOP1 NOP12 NOP2 NOP56 NOP7 NSA1 NSA2 NUG1 PHO84 PSE1 RRP1 RRP12 SEH1 SKP1 SLT2 SPB1 SSF1 SSF2 SSZ1 TIF6 URB1 UTP10 UTP4 YAK1 YBL104C YPL009C
View Details Qiu et al. (2008) BRX1 MRT4 NIP7 NUG1 RPL15B RPL27A RPL3 RPL7B RPS22A

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data NIP7 Huh WK, et al. (2003)
View Data NIP7 and NOP56 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..181] Pfam 6.552842 Uncharacterised protein family (UPF0113) No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 2.67504868533195 bayes_pls_golite062009
  • binding
  • 1.85616760502339 bayes_pls_golite062009
  • nucleic acid binding
  • 1.26170105245043 bayes_pls_golite062009
  • transcription regulator activity
  • 1.25899985044692 bayes_pls_golite062009
  • DNA binding
  • 1.00086161863786 bayes_pls_golite062009
  • transcription factor activity
  • 0.459074630080185 bayes_pls_golite062009
  • protein binding
  • 0.377070376016177 bayes_pls_golite062009
  • ligase activity
  • 0.365702917579223 bayes_pls_golite062009
  • catalytic activity
  • 0.147263815852997 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle