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Protein Overview: YPL009C

General Information:
Name(s) found: YPL009C [SGD]
Description(s) found:
Found 28 descriptions.
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  • Protein of unknown function; may interact with ribosomes, based on co-purification experiments; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YPL009C is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 1038 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    ribosome [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQRISALDL LLLARELKQD LEGYRLSNIY NIADSSKQFL LKFNKPDSKL NVVVDCGLRI  60
   61 YLTEFSRPIP PTPSGFVVKL RKHLKAKRLT ALKQVDQDRI LVLQFADGHF YLVLEFFSAG 120
  121 NVILLDENRR IMALQRVVLE HENKVGQIYE MFDESLFTTN NESADESIEK NRKAEYTSEL 180
  181 VNEWIKAVQA KYESDITVIK QLNIQGKEGA KKKKVKVPSI HKLLLSKVPH LSSDLLSKNL 240
  241 KVFNIDPSES CLNLLEETDS LAELLNSTQL EYNQLLTTTD RKGYILAKRN ENYISEKDTA 300
  301 DLEFIYDTFH PFKPYINGGD TDSSCIIEVE GPYNRTLDKF FSTIESSKYA LRIQNQESQA 360
  361 QKKIDDARAE NDRKIQALLD VQELNERKGH LIIENAPLIE EVKLAVQGLI DQQMDWNTIE 420
  421 KLIKSEQKKG NRIAQLLNLP LNLKQNKISV KLDLSSKELN TSSDEDNESE GNTTDSSSDS 480
  481 DSEDMESSKE RSTKSMKRKS NEKINVTIDL GLSAYANATE YFNIKKTSAQ KQKKVEKNVG 540
  541 KAMKNIEVKI DQQLKKKLKD SHSVLKKIRT PYFFEKYSWF ISSEGFLVMM GKSPAETDQI 600
  601 YSKYIEDDDI YMSNSFNSHV WIKNPEKTEV PPNTLMQAGI LCMSSSEAWS KKISSSPWWC 660
  661 FAKNVSKFDG SDNSILPEGA FRLKNENDQN HLPPAQLVMG FGFLWKVKTS GNEDNGDDDE 720
  721 EEEEEEEEEE EEEEEEEEEE EEEKEEEEKE EEQQQDEDDS NEVNGLEKGG DSNDSTKNNS 780
  781 FEHDNLEKDI EKHCTISSDT DSDSGNAKAK NDNSSTQRIL DEPGVPISLI ENINSNVRGK 840
  841 RGKLKKIQKK YADQDETERL LRLEALGTLK GIEKQQQRKK EEIMKREVRE DRKNKREKQR 900
  901 RLQALKFTKK EKARVNYDKH KSELKPSLDK GDVVDDIIPV FAPWPALLKY KYKVKIQPGS 960
  961 AKKTKTLTEI LHYFKSRPLD GSSTDNEMDW PQEHEMIKGL KEQDLVLLLC VDKLKVTIAG1020
 1021 QKSTKNGGNS SKKGKKKR

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) CBF5 JJJ1 PDS1 YPL009C
    View Details Gavin AC, et al. (2006) RPL27B SHM1 YPL009C
    View Details Gavin AC, et al. (2002) ADE3 ARX1 DBP2 LSG1 MIS1 NOG1 NOP7 NUG1 RAT1 SHM1 YPL009C
    View Details Ho Y, et al. (2002) BRX1 CKB1 COX6 FET4 GAR1 NIP7 NMD3 NOC2 NOP1 NOP2 NOP56 NOP7 NSA1 NSA2 NUG1 PHO84 RRP1 YPL009C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run KIP3 No Comments Cheeseman IM, et al. (2002)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YPL009C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..254] PSI-BLAST 77.69897 Heavy meromyosin subfragment
    2 View Details [255..569] PSI-BLAST 77.69897 Heavy meromyosin subfragment
    3 View Details [570..700] MSA 2.243989 View MSA. No confident structure predictions are available.
    4 View Details [701..928] MSA 7.059996 View MSA. No confident structure predictions are available.
    5 View Details [929..1038] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle