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Protein Overview: NMD5

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)
View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data NMD5 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..726] MSA 11.125995 View MSA. No confident structure predictions are available.
2 View Details [727..866] MSA 2.097994 View MSA. No confident structure predictions are available.
3 View Details [867..1048] MSA 1.055982 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • protein transporter activity
  • 4.58709163830613 bayes_pls_golite062009
  • binding
  • 3.0667965351474 bayes_pls_golite062009
  • protein transmembrane transporter activity
  • 2.74547353635661 bayes_pls_golite062009
  • transporter activity
  • 2.48700774379895 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 2.26725422172281 bayes_pls_golite062009
  • nuclear export signal receptor activity
  • 2.13470398426489 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 1.97003189625955 bayes_pls_golite062009
  • nuclear localization sequence binding
  • 1.91487015967262 bayes_pls_golite062009
  • protein binding
  • 1.73688475473996 bayes_pls_golite062009
  • molecular transducer activity
  • 1.51103985174196 bayes_pls_golite062009
  • signal transducer activity
  • 1.51103985174196 bayes_pls_golite062009
  • actin binding
  • 1.4328432044371 bayes_pls_golite062009
  • transmembrane transporter activity
  • 1.28481004323799 bayes_pls_golite062009
  • RNA binding
  • 1.20550543134698 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
  • 1.09652988954158 bayes_pls_golite062009
  • nucleic acid binding
  • 1.00841167631924 bayes_pls_golite062009
  • peptide binding
  • 0.61212282188613 bayes_pls_golite062009
  • signal sequence binding
  • 0.57106697498903 bayes_pls_golite062009
  • structural molecule activity
  • 0.449804281824548 bayes_pls_golite062009
  • transcription regulator activity
  • 0.385452858197632 bayes_pls_golite062009
  • mRNA binding
  • 0.37278269424461 bayes_pls_golite062009
  • DNA binding
  • 0.309260217284589 bayes_pls_golite062009
  • active transmembrane transporter activity
  • 0.252495966234234 bayes_pls_golite062009
  • ion transmembrane transporter activity
  • 0.248585912061178 bayes_pls_golite062009
  • primary active transmembrane transporter activity
  • 0.226380819487924 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
  • 0.217517113570989 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
  • 0.178770060806735 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
  • 0.175241020572885 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
  • 0.174922130116569 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.100181463251306 bayes_pls_golite062009
  • pyrophosphatase activity
  • 0.0635404099346928 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
  • 0.0548082069333885 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
  • 0.052195223119721 bayes_pls_golite062009
  • cation transmembrane transporter activity
  • 0.0405268469927988 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle