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Protein Overview: RRP6

Protein Complex Data

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data RRP6 and NOP56 Huh WK, et al. (2003)
View Data RRP6 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..187] PSI-BLAST 8.69897 No description for 1j5fA_ was found.
2 View Details [188..420] PSI-BLAST 1049.09691 No description for 1m0yA_ was found.
3 View Details [421..527] MSA 11.125993 View MSA. Confident ab initio structure predictions are available.
4 View Details [528..733] MSA 1.030973 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • ribonuclease activity
  • 8.897633904438 bayes_pls_golite062009
  • exoribonuclease activity
  • 8.06617873723494 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 7.94412552409677 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 6.42138754551191 bayes_pls_golite062009
  • exonuclease activity
  • 5.51415931494501 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 5.26222975375789 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 5.22368891565602 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 4.91798726616235 bayes_pls_golite062009
  • nuclease activity
  • 3.11657409772275 bayes_pls_golite062009
  • ribonuclease H activity
  • 2.91966688044755 bayes_pls_golite062009
  • hydrolase activity
  • 2.78602644579272 bayes_pls_golite062009
  • 2.73492915653996 bayes_pls_golite062009
  • endonuclease activity
  • 2.63074055051349 bayes_pls_golite062009
  • endoribonuclease activity
  • 2.59247838057313 bayes_pls_golite062009
  • binding
  • 1.92623883978176 bayes_pls_golite062009
  • transcription regulator activity
  • 1.7470402498426 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
  • 1.74431545836806 bayes_pls_golite062009
  • nucleic acid binding
  • 1.73824903971928 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 1.59628511603826 bayes_pls_golite062009
  • DNA binding
  • 1.46904214736532 bayes_pls_golite062009
  • RNA binding
  • 1.43996903907704 bayes_pls_golite062009
  • catalytic activity
  • 1.25233849524628 bayes_pls_golite062009
  • transcription factor activity
  • 0.857419485352409 bayes_pls_golite062009
  • deoxyribonuclease activity
  • 0.24906263529692 bayes_pls_golite062009
  • DNA polymerase activity
  • 0.0189279348688405 bayes_pls_golite062009
  • 5'-3' exonuclease activity
  • 0.00858768379909414 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle