YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CSL4

Protein Complex Data

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

  PROTEIN(S) PUBLICATION
View Data CSL4 and NOP56 Huh WK, et al. (2003)
View Data CSL4 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..292] ORFEUS 8.02 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • ribonuclease activity
  • 7.42330864261751 bayes_pls_golite062009
  • exoribonuclease activity
  • 6.76241588209982 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 6.73428326869965 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 5.13367897180134 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 3.51306349336452 bayes_pls_golite062009
  • nucleic acid binding
  • 3.194200758646 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 3.07263153665399 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 2.73968547121328 bayes_pls_golite062009
  • DNA binding
  • 2.71213098011194 bayes_pls_golite062009
  • exonuclease activity
  • 2.66053639652924 bayes_pls_golite062009
  • RNA binding
  • 2.41160981373213 bayes_pls_golite062009
  • binding
  • 2.24181355929217 bayes_pls_golite062009
  • structural constituent of ribosome
  • 2.02605441840546 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.81524862921454 bayes_pls_golite062009
  • structural molecule activity
  • 1.81283970647925 bayes_pls_golite062009
  • single-stranded DNA binding
  • 1.62996999055328 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 1.35850109411274 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 1.35845277283398 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 1.35845277283398 bayes_pls_golite062009
  • 1.2099360907571 bayes_pls_golite062009
  • exoribonuclease II activity
  • 1.18248519339188 bayes_pls_golite062009
  • transcription regulator activity
  • 0.996884322431837 bayes_pls_golite062009
  • hydrolase activity
  • 0.724860465280978 bayes_pls_golite062009
  • nuclease activity
  • 0.57381531077345 bayes_pls_golite062009
  • mRNA binding
  • 0.4162128308402 bayes_pls_golite062009
  • ligase activity
  • 0.346041081217685 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.32084431704638 bayes_pls_golite062009
  • transcription factor activity
  • 0.298729064067577 bayes_pls_golite062009
  • translation regulator activity
  • 0.22908707234671 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.179682348023561 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
  • 0.151650064901878 bayes_pls_golite062009
  • translation initiation factor activity
  • 0.11625379846973 bayes_pls_golite062009
  • RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle