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Protein Overview: RRP43

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data RRP43 and NOP56 Huh WK, et al. (2003)
View Data RRP43 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..277] Pfam 42.026872 3' exoribonuclease family, domain 1 No confident structure predictions are available.
2 View Details [278..394] Pfam 14.455932 3' exoribonuclease family, domain 2 No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • ribonuclease activity
  • 7.23127959979732 bayes_pls_golite062009
  • exoribonuclease activity
  • 7.1818107582098 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 7.15162444368945 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 6.07082095113089 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 3.97196194079029 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 3.56720447478991 bayes_pls_golite062009
  • exonuclease activity
  • 3.17253431625181 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 2.74672075915955 bayes_pls_golite062009
  • RNA binding
  • 1.95606366707311 bayes_pls_golite062009
  • structural constituent of ribosome
  • 1.71911386517518 bayes_pls_golite062009
  • structural molecule activity
  • 1.54100243929123 bayes_pls_golite062009
  • hydrolase activity
  • 1.48006994106758 bayes_pls_golite062009
  • transcription regulator activity
  • 1.21692959363145 bayes_pls_golite062009
  • nucleic acid binding
  • 1.06421277984865 bayes_pls_golite062009
  • mRNA binding
  • 1.04070984651466 bayes_pls_golite062009
  • binding
  • 0.958185654055629 bayes_pls_golite062009
  • DNA binding
  • 0.849730288865394 bayes_pls_golite062009
  • catalytic activity
  • 0.832312651473597 bayes_pls_golite062009
  • nuclease activity
  • 0.455660692064928 bayes_pls_golite062009
    2 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle