YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: NAM8

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Riffle et al. (2010) (Unpublished Data) CBC2 LUC7 MUD1 NAM8 PRP39 PRP40 PRP42 RSE1 SMB1 SMD1 SMD2 SMD3 SNP1 SNU56 SNU71 STO1 YHC1
View Details Krogan NJ, et al. (2006) AAR2 BRR1 BRR2 CSE1 LUC7 MUD1 NAM8 PRP2 PRP3 PRP31 PRP39 PRP40 PRP42 PRP6 PRP8 RRG7 SMB1 SMD1 SMD2 SMD3 SME1 SMX2 SMX3 SNP1 SNU114 SNU56 SNU66 SNU71 TAD2 YDL085C-A YHC1 YJU2 YNL092W
View Details Gavin AC, et al. (2006) LUC7 MUD1 NAM8 PRP39 PRP40 PRP42 SNP1 SNU56 SNU71 YHC1
View Details Gavin AC, et al. (2002) AIR2 BRR1 BUR2 CBC2 CDC33 CLF1 CSN12 CUS1 CWC2 DIB1 ECM2 HSH155 HTA1 KAP95 LEA1 LSM4 LUC7 MSH4 MSL1 MUD1 NAB3 NAB6 NAM8 NPL3 NRD1 NUP60 PRP11 PRP19 PRP21 PRP3 PRP31 PRP39 PRP4 PRP40 PRP42 PRP43 PRP46 PRP6 PRP9 RSE1 SCP160 SEN1 SGV1 SMB1 SMD1 SMD2 SMD3 SME1 SMX2 SMX3 SNP1 SNT309 SNU114 SNU56 SNU66 SNU71 SPP382 SRB2 SRO9 SRP1 STO1 THO2 TIF4631 TIF4632 YEF3 YRA2
View Details Ho Y, et al. (2002) DIS3 EAF3 FIP1 HAS1 HPR1 KAP95 MES1 MFT1 NAM8 NOP6 NUP1 NUP2 NUP60 PAP1 PCT1 REB1 RNT1 RRP4 RRP43 RRP6 RTT103 SIF2 SIN3 SNU56 SRP1 STO1 THO2 TRA1 UME1 YPR090W
View Details Qiu et al. (2008) AAR2 BRR1 BRR2 CBC2 CDC40 CEF1 CLF1 CUS1 CUS2 CWC15 CWC2 CWC22 CWC23 CWC25 DHR2 DIB1 ECM2 HSH155 HSH49 IST3 ISY1 LEA1 LSM3 LSM4 LSM5 LUC7 MAK5 MSL1 MUD1 MUD2 NAM8 PRP11 PRP16 PRP18 PRP19 PRP2 PRP22 PRP24 PRP28 PRP3 PRP31 PRP38 PRP39 PRP4 PRP40 PRP42 PRP43 PRP5 PRP6 PRP8 PRP9 RSE1 SLU7 SMB1 SMD1 SMD2 SMD3 SME1 SMX2 SMX3 SNP1 SNU114 SNU23 SNU66 SPP2 SPP381 SPP382 STO1 SUB2 SYF2 YHC1

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CLB2 No Comments McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen PET111 NAM8 2 Unpublished Fields Lab Data
View Screen GTS1 NAM8 2 Unpublished Fields Lab Data

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

  PROTEIN(S) PUBLICATION
View Data NAM8 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..164] PSI-BLAST 126.67837 Poly(A)-binding protein
2 View Details [165..303] PSI-BLAST 14.522879 Polypyrimidine tract-binding protein
3 View Details [304..396] PSI-BLAST 14.522879 Polypyrimidine tract-binding protein
4 View Details [397..523] MSA 1.382997 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 6.73097473547076 bayes_pls_golite062009
  • 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
  • 5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
  • 4.92126426323641 bayes_pls_golite062009
  • U1 snRNA binding
  • 4.22094068431436 bayes_pls_golite062009
  • snRNA binding
  • 4.06596327298973 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.93798024346416 bayes_pls_golite062009
  • structural molecule activity
  • 2.78501986457503 bayes_pls_golite062009
  • protein binding
  • 2.17260848225967 bayes_pls_golite062009
  • transcription regulator activity
  • 1.92450390013691 bayes_pls_golite062009
  • DNA binding
  • 1.8021593476478 bayes_pls_golite062009
  • transcription factor activity
  • 1.15127506309683 bayes_pls_golite062009
  • transcription activator activity
  • 1.12833244388568 bayes_pls_golite062009
  • transcription repressor activity
  • 0.998305828880243 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.824614388276642 bayes_pls_golite062009
  • mRNA 5'-UTR binding
  • 0.625848256054783 bayes_pls_golite062009
  • translation repressor activity, nucleic acid binding
  • 0.461000905454505 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.425042944899091 bayes_pls_golite062009
  • hydrolase activity
  • 0.389390547875764 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.383589644462932 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
  • snoRNA binding
  • 0.0568636182001701 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
  • 6.73097473547076 bayes_pls_golite062009
  • 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
  • 5.29759606920196 bayes_pls_golite062009
  • nucleic acid binding
  • 4.92126426323641 bayes_pls_golite062009
  • U1 snRNA binding
  • 4.22094068431436 bayes_pls_golite062009
  • snRNA binding
  • 4.06596327298973 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 3.11990160533699 bayes_pls_golite062009
  • single-stranded RNA binding
  • 2.93798024346416 bayes_pls_golite062009
  • structural molecule activity
  • 2.78501986457503 bayes_pls_golite062009
  • protein binding
  • 2.17260848225967 bayes_pls_golite062009
  • transcription regulator activity
  • 1.92450390013691 bayes_pls_golite062009
  • DNA binding
  • 1.8021593476478 bayes_pls_golite062009
  • transcription factor activity
  • 1.15127506309683 bayes_pls_golite062009
  • transcription activator activity
  • 1.12833244388568 bayes_pls_golite062009
  • transcription repressor activity
  • 0.998305828880243 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.824614388276642 bayes_pls_golite062009
  • mRNA 5'-UTR binding
  • 0.625848256054783 bayes_pls_golite062009
  • translation repressor activity, nucleic acid binding
  • 0.461000905454505 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.425042944899091 bayes_pls_golite062009
  • hydrolase activity
  • 0.389390547875764 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.383589644462932 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
  • snoRNA binding
  • 0.0568636182001701 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle