| Protein: | NAM8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 523 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAM8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..523] | [1..523] |
|
|
0.0 | [44..507] | [1..487] |
|
|
0.0 | [44..507] | [1..487] |
|
|
0.0 | [44..507] | [1..487] |
|
|
0.0 | [44..507] | [1..486] |
|
|
9.0E-95 | [51..511] | [8..493] |
|
Region A: Residues: [1-164] |
1 11 21 31 41 51
| | | | | |
1 MSYKQTTYYP SRGNLVRNDS SPYTNTISSE TNNSSTSVLS LQGASNVSLG TTGNQLYMGD 60
61 LDPTWDKNTV RQIWASLGEA NINVRMMWNN TLNNGSRSSM GPKNNQGYCF VDFPSSTHAA 120
121 NALLKNGMLI PNFPNKKLKL NWATSSYSNS NNSLNNVKSG NNCS
|
| Detection Method: |  |
| Confidence: | 126.67837 |
| Match: | 1cvjA_ |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| transcription activator activity | 1.12833244388568 | bayes_pls_golite062009 |
| transcription repressor activity | 0.998305828880243 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| mRNA 5'-UTR binding | 0.625848256054783 | bayes_pls_golite062009 |
| translation repressor activity, nucleic acid binding | 0.461000905454505 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| hydrolase activity | 0.389390547875764 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
|
Region A: Residues: [165-303] |
1 11 21 31 41 51
| | | | | |
1 IFVGDLAPNV TESQLFELFI NRYASTSHAK IVHDQVTGMS KGYGFVKFTN SDEQQLALSE 60
61 MQGVFLNGRA IKVGPTSGQQ QHVSGNNDYN RSSSSLNNEN VDSRFLSKGQ SFLSNGNNNM 120
121 GFKRNHMSQF IYPVQQQPS
|
| Detection Method: | |
| Confidence: | 14.522879 |
| Match: | 1qm9A_ |
| Description: | Polypyrimidine tract-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| U1 snRNA binding | 4.22094068431436 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
| protein binding | 2.17260848225967 | bayes_pls_golite062009 |
| transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
| DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
| transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
| transcription activator activity | 1.12833244388568 | bayes_pls_golite062009 |
| transcription repressor activity | 0.998305828880243 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| mRNA 5'-UTR binding | 0.625848256054783 | bayes_pls_golite062009 |
| translation repressor activity, nucleic acid binding | 0.461000905454505 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
| hydrolase activity | 0.389390547875764 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
| translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
| snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
|
Region A: Residues: [304-396] |
1 11 21 31 41 51
| | | | | |
1 LNHFTDPNNT TVFIGGLSSL VTEDELRAYF QPFGTIVYVK IPVGKCCGFV QYVDRLSAEA 60
61 AIAGMQGFPI ANSRVRLSWG RSAKQTALLQ QAM
|
| Detection Method: | |
| Confidence: | 14.522879 |
| Match: | 1qm9A_ |
| Description: | Polypyrimidine tract-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [397-523] |
1 11 21 31 41 51
| | | | | |
1 LSNSLQVQQQ QPGLQQPNYG YIPSSTCEAP VLPDNNVSST MLPGCQILNY SNPYANANGL 60
61 GSNNFSFYSN NNATNTQATS LLADTSSMDL SGTGGQQVIM QGSEAVVNST NAMLNRLEQG 120
121 SNGFMFA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
