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Protein Overview: RRP9

General Information:
Name(s) found: RRP9 / YPR137W [SGD]
Description(s) found:
Found 23 descriptions.
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  • Protein involved in pre-rRNA processing, associated with U3 snRNP; component of small ribosomal subunit (SSU) processosome; ortholog of the human U3-55k protein [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 573 amino acids

    Gene Ontology:
    Cellular Component: nuclear outer membrane [TASLink to PubMed article]
    small nuclear ribonucleoprotein complex [TASLink to PubMed article]
    small nucleolar ribonucleoprotein complex [IPILink to PubMed article][TASLink to PubMed article]
    Biological Process: rRNA modification [TASLink to PubMed article]
    maturation of SSU-rRNA [IPILink to PubMed article]
    Molecular Function: snoRNA binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVTQQKKR KRSKGEVNPS KPTVDEEITD PSSNEDEQLE VSDEEDALES EEEFEGENPA  60
   61 DKRRRLAKQY LENLKSEAND ILTDNRNAEE KDLNNLKERT IDEYNNFDAG DLDKDIIASR 120
  121 LKEDVAEQQG RVFRYFGDKL LISEAKQSFT RVGENNLTCI SCFQPVLNKY TFEESSNGDK 180
  181 NKGRLFAYTV SKDLQLTKYD ITDFSKRPKK LKYAKGGAKY IPTSKHEYEN TTEGHYDEIL 240
  241 TVAASPDGKY VVTGGRDRKL IVWSTESLSP VKVIPTKDRR GEVLSLAFRK NSDQLYASCA 300
  301 DFKIRTYSIN QFSQLEILYG HHDIVEDISA LAMERCVTVG ARDRTAMLWK IPDETRLTFR 360
  361 GGDEPQKLLR RWMKENAKEG EDGEVKYPDE SEAPLFFCEG SIDVVSMVDD FHFITGSDNG 420
  421 NICLWSLAKK KPIFTERIAH GILPEPSFND ISGETDEELR KRQLQGKKLL QPFWITSLYA 480
  481 IPYSNVFISG SWSGSLKVWK ISDNLRSFEL LGELSGAKGV VTKIQVVESG KHGKEKFRIL 540
  541 ASIAKEHRLG RWIANVSGAR NGIYSAVIDQ TGF

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) BMS1 BUD21 DIP2 ECM16 EMG1 ENP2 IMP3 IMP4 KRE33 MPP10 NAN1 NOC4 NOP1 NOP56 NOP58 PWP2 RRP9 SOF1 UTP10 UTP13 UTP15 UTP18 UTP20 UTP21 UTP30 UTP4 UTP6 UTP7 UTP8
    View Details Krogan NJ, et al. (2006) BUD21 GLK1 NOP58 PRP4 RRP9
    View Details Gavin AC, et al. (2006) BUD21 CMS1 DIP2 MRD1 NAN1 NOP56 NOP58 PNO1 PWP2 ROK1 RRP9 UTP10 UTP13 UTP15 UTP18 UTP21 UTP22 UTP4 UTP6 UTP7 UTP8 UTP9
    View Details Gavin AC, et al. (2002) ADE4 ASC1 BFR2 BMS1 BRX1 BUD21 CBF5 CFT2 CKA1 CKA2 CKB1 CKB2 CMS1 DBP8 DIA4 DIM1 DIP2 DIS3 ECM16 ECM29 EMG1 ENP1 ENP2 ERO1 ESF1 ESF2 FAP7 FIP1 GCN1 GLC7 HAS1 HCA4 HHF1, HHF2 HSL1 HTA2 IMP3 IMP4 KRE33 KRR1 LCP5 LTV1 MPP10 MRD1 MVD1 NAN1 NOB1 NOC2 NOC4 NOP1 NOP12 NOP14 NOP56 NOP58 NOP6 PAP1 PFS2 PNO1 PRE6 PRE9 PRP43 PTA1 PTI1 PWP2 RCL1 REF2 RML2 RNA14 ROK1 RPP2B RRP12 RRP7 RRP9 RTG2 SAM1 SCL1 SEC21 SLX9 SOF1 SRO9 TIF1, TIF2 TSR1 UTP10 UTP11 UTP13 UTP15 UTP18 UTP20 UTP21 UTP22 UTP30 UTP4 UTP6 UTP7 UTP8 UTP9 YOR059C YSH1
    View Details Ho Y, et al. (2002) AVO1 NOP58 PRO1 RRP9 RRT6 UTP20
    View Details Qiu et al. (2008) BUD21 DIP2 DRS1 ENP1 ERB1 GAR1 HCA4 IMP3 KRE33 LCP5 MAK5 MRD1 NAN1 NHP2 NOP1 NOP13 NOP14 NOP15 NSR1 NUG1 PWP2 PXR1 RRP3 RRP5 RRP9 SBP1 SNU13 SOF1 UTP10 UTP11 UTP13 UTP14 UTP15 UTP20 UTP21 UTP22 UTP4 UTP5 UTP6 UTP7 UTP8 UTP9

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run NSE3 No Comments Hazbun TR, et al. (2003)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data RRP9 and NOP56 Huh WK, et al. (2003)
    View Data RRP9 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..59] deduced N/A No confident structure predictions are available.
    2 View Details [60..140] PSI-BLAST 129.68867 Cdc4 F-box and linker domains; Cdc4 propeller domain
    3 View Details [141..434] PSI-BLAST 129.68867 Cdc4 F-box and linker domains; Cdc4 propeller domain
    4 View Details [435..502] PSI-BLAST 123.927757 Tup1, C-terminal domain
    5 View Details [503..573] deduced N/A Confident ab initio structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle