| General Information: |
|
| Name(s) found: |
SEC21 /
YNL287W
[SGD]
|
| Description(s) found:
Found 28 descriptions. SHOW ALL |
|
| Organism: | Saccharomyces cerevisiae |
| Length: | 935 amino acids |
Gene Ontology: |
|
| Cellular Component: |
endosome
[IDA ]
COPI vesicle coat [IDA ]
|
| Biological Process: |
ER to Golgi vesicle-mediated transport
[IMP]
retrograde vesicle-mediated transport, Golgi to ER [IMP ]
|
| Molecular Function: |
molecular_function
[ND]
|
| Sequence: |
|
| Sequence: [PDR BLAST] [ProtParam] |
1 11 21 31 41 51
| | | | | |
1 MSAHTYKKFE NSTSGDLPDK MTIYQDCMNT FNESPVNSKR CRLLISRLLR LLAQGETFPQ 60
61 NEATALFFSI SKLFQHQNDP LRQAVYLAIK ELSGISEDVL MATSSIMKDV QNGSDLIKPD 120
121 AIRSLTYVLD ESTAFSAERL LKSAVVSRHP SISSAALCTS YHLLPISEVT IRRFTNETQE 180
181 AVLDLKQFPN QHGNSEYYPN STYISQYHAL GLLYQLKKTD KMALLKLVRH FSENNSMKNQ 240
241 LAKVELVKIV NDLIYRDPQL FSQFRPLLSD WLSNKFESVQ LETAKLITSF ATRNSRLVAP 300
301 ELYAAAISAL QSLLTVPRVS SRFAALRILN RISMVSPEKI VVCNPELESL INDSNRNIST 360
361 YAITTLLKTG TSKNISSLIS TITNFIHDVS DDFKIIIIDA VRTLSLNFPQ EWKSILNFLI 420
421 DVLKNSEGGF KFKNSIVEAL IDIVSFVPQS KELALENLCD FIEDCEFNEI LVRILHLLGK 480
481 EGPSAPNPSL YVRHIYNRVV LENSIIRSAA VVALSKFALT KNDPTLYESI ISLLKRIAND 540
541 KDDEVRDRAT IALEFIDSAR NKDDVIAQNL IESKYFYDIP SLESKLSSYI SSNTDSFATA 600
601 FDVNQVRKFT EDEMKAINLK RKQEQIFNQK SETTLDTTPE AESVPEKRAD ANSFAGPNLD 660
661 DHQEDLLATK YADELLSIEQ IKPFGQLVNS SRAISLTEPE AEFVVRGVKH LFKDNVVLQF 720
721 NITNTLTDIA LDNVSVVCTP EISDEAELEE LFTLQVDRLL PSEEAACYVA FKKLDEIVME 780
781 GFLNNLTFTT KEINPDTNEP FDGDEGFQDE YEIDSIFLNA GDYVKSSFTG NFSATFDELP 840
841 CEEVAVFNIQ EDLSIQEVVD KIILNSSCLP VESTQFAPSD SNSHTLKLFG KSALTGSKVA 900
901 LQIKMIKSSK GLALKVHGKG EDSLLCSDLV NGLMQ |
The following runs contain data for this protein:
| BAIT | COMMENTS | PUBLICATION | |
| View Run | control 1 | McCusker D, et al (2007) | |
| View Run | control 2 | McCusker D, et al (2007) | |
| View Run | experimental1 - mih1-1 | McCusker D, et al (2007) | |
| View Run | experimental2 - mih1-2 | McCusker D, et al (2007) | |
| View Run | sample cbf3 from feb 2005 | Sandall S, et all (2006) | |
| View Run | No Comments | Schneider, DA, et al. (2006) | |
| View Run | Sample 2- cpn2 from june 2005 | McCusker D, et al (2007) | |
| View Run | Sample 3 - cpn + atp, from june 2005 | McCusker D, et al (2007) | |
| View Run | Sample boi 1 with ha tag from october 2005 | McCusker D, et al (2007) | |
| View Run | #31 Asynchronous Prep (Protease cleavage) | Keck JM, et al. (2011) | |
| View Run | #04 Alpha Factor Prep2 | Keck JM, et al. (2011) |
NOT SHOWING SINGLE HITS. [ Show Single Hits ]
New Feature: Upload Your Own Microscopy Data
| PROTEIN(S) | PUBLICATION | |
| View Data |
|
Huh WK, et al. (2003) |
| View Data |
|
Huh WK, et al. (2003) |
| View Data |
|
Huh WK, et al. (2003) |
Domains predicted:
| # | Region(s) | Method | Confidence | Match Description | |
| 1 | View Details | [1..105] |  |
115.70927 | Adaptin beta subunit N-terminal fragment |
| 2 | View Details | [106..213] | |
115.70927 | Adaptin beta subunit N-terminal fragment |
| 3 | View Details | [214..357] [579..650] |
|
115.70927 | Adaptin beta subunit N-terminal fragment |
| 4 | View Details | [358..451] | |
115.70927 | Adaptin beta subunit N-terminal fragment |
| 5 | View Details | [452..578] | |
115.70927 | Adaptin beta subunit N-terminal fragment |
| 6 | View Details | [651..749] | |
1.106983 | View MSA. No confident structure predictions are available. |
| 7 | View Details | [750..935] | |
3.019968 | View MSA. No confident structure predictions are available. |
| Protein predicted to be: | GLOBULAR (No transmembrane regions or signal peptide) |
| Confidence of classification: | 0.94 |
Source: Reynolds et al. (2008)
