| Protein: | SEC21 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 935 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC21.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..933] | [1..870] |
|
|
0.0 | [1..933] | [1..872] |
|
|
0.0 | [1..933] | [1..872] |
|
|
0.0 | [1..933] | [1..873] |
|
|
0.0 | [1..933] | [1..873] |
|
|
0.0 | [1..935] | [1..935] |
|
Region A: Residues: [1-105] |
1 11 21 31 41 51
| | | | | |
1 MSAHTYKKFE NSTSGDLPDK MTIYQDCMNT FNESPVNSKR CRLLISRLLR LLAQGETFPQ 60
61 NEATALFFSI SKLFQHQNDP LRQAVYLAIK ELSGISEDVL MATSS
|
| Detection Method: |  |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [106-213] |
1 11 21 31 41 51
| | | | | |
1 IMKDVQNGSD LIKPDAIRSL TYVLDESTAF SAERLLKSAV VSRHPSISSA ALCTSYHLLP 60
61 ISEVTIRRFT NETQEAVLDL KQFPNQHGNS EYYPNSTYIS QYHALGLL
|
| Detection Method: | |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [214-357] |
1 11 21 31 41 51
| | | | | |
1 YQLKKTDKMA LLKLVRHFSE NNSMKNQLAK VELVKIVNDL IYRDPQLFSQ FRPLLSDWLS 60
61 NKFESVQLET AKLITSFATR NSRLVAPELY AAAISALQSL LTVPRVSSRF AALRILNRIS 120
121 MVSPEKIVVC NPELESLIND SNRN
|
|
Region B: Residues: [579-650] |
1 11 21 31 41 51
| | | | | |
1 IPSLESKLSS YISSNTDSFA TAFDVNQVRK FTEDEMKAIN LKRKQEQIFN QKSETTLDTT 60
61 PEAESVPEKR AD
|
| Detection Method: | |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [358-451] |
1 11 21 31 41 51
| | | | | |
1 ISTYAITTLL KTGTSKNISS LISTITNFIH DVSDDFKIII IDAVRTLSLN FPQEWKSILN 60
61 FLIDVLKNSE GGFKFKNSIV EALIDIVSFV PQSK
|
| Detection Method: | |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [452-578] |
1 11 21 31 41 51
| | | | | |
1 ELALENLCDF IEDCEFNEIL VRILHLLGKE GPSAPNPSLY VRHIYNRVVL ENSIIRSAAV 60
61 VALSKFALTK NDPTLYESII SLLKRIANDK DDEVRDRATI ALEFIDSARN KDDVIAQNLI 120
121 ESKYFYD
|
| Detection Method: | |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [651-749] |
1 11 21 31 41 51
| | | | | |
1 ANSFAGPNLD DHQEDLLATK YADELLSIEQ IKPFGQLVNS SRAISLTEPE AEFVVRGVKH 60
61 LFKDNVVLQF NITNTLTDIA LDNVSVVCTP EISDEAELE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [750-935] |
1 11 21 31 41 51
| | | | | |
1 ELFTLQVDRL LPSEEAACYV AFKKLDEIVM EGFLNNLTFT TKEINPDTNE PFDGDEGFQD 60
61 EYEIDSIFLN AGDYVKSSFT GNFSATFDEL PCEEVAVFNI QEDLSIQEVV DKIILNSSCL 120
121 PVESTQFAPS DSNSHTLKLF GKSALTGSKV ALQIKMIKSS KGLALKVHGK GEDSLLCSDL 180
181 VNGLMQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
