| Protein: | SEC21 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 935 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC21.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..933] | [1..870] |
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0.0 | [1..933] | [1..872] |
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0.0 | [1..933] | [1..872] |
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0.0 | [1..933] | [1..873] |
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0.0 | [1..933] | [1..873] |
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0.0 | [1..935] | [1..935] |
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Region A: Residues: [1-105] |
1 11 21 31 41 51
| | | | | |
1 MSAHTYKKFE NSTSGDLPDK MTIYQDCMNT FNESPVNSKR CRLLISRLLR LLAQGETFPQ 60
61 NEATALFFSI SKLFQHQNDP LRQAVYLAIK ELSGISEDVL MATSS
|
| Detection Method: |  |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [106-213] |
1 11 21 31 41 51
| | | | | |
1 IMKDVQNGSD LIKPDAIRSL TYVLDESTAF SAERLLKSAV VSRHPSISSA ALCTSYHLLP 60
61 ISEVTIRRFT NETQEAVLDL KQFPNQHGNS EYYPNSTYIS QYHALGLL
|
| Detection Method: | |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [214-357] |
1 11 21 31 41 51
| | | | | |
1 YQLKKTDKMA LLKLVRHFSE NNSMKNQLAK VELVKIVNDL IYRDPQLFSQ FRPLLSDWLS 60
61 NKFESVQLET AKLITSFATR NSRLVAPELY AAAISALQSL LTVPRVSSRF AALRILNRIS 120
121 MVSPEKIVVC NPELESLIND SNRN
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|
Region B: Residues: [579-650] |
1 11 21 31 41 51
| | | | | |
1 IPSLESKLSS YISSNTDSFA TAFDVNQVRK FTEDEMKAIN LKRKQEQIFN QKSETTLDTT 60
61 PEAESVPEKR AD
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| Detection Method: | |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [358-451] |
1 11 21 31 41 51
| | | | | |
1 ISTYAITTLL KTGTSKNISS LISTITNFIH DVSDDFKIII IDAVRTLSLN FPQEWKSILN 60
61 FLIDVLKNSE GGFKFKNSIV EALIDIVSFV PQSK
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| Detection Method: | |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [452-578] |
1 11 21 31 41 51
| | | | | |
1 ELALENLCDF IEDCEFNEIL VRILHLLGKE GPSAPNPSLY VRHIYNRVVL ENSIIRSAAV 60
61 VALSKFALTK NDPTLYESII SLLKRIANDK DDEVRDRATI ALEFIDSARN KDDVIAQNLI 120
121 ESKYFYD
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| Detection Method: | |
| Confidence: | 115.70927 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [651-749] |
1 11 21 31 41 51
| | | | | |
1 ANSFAGPNLD DHQEDLLATK YADELLSIEQ IKPFGQLVNS SRAISLTEPE AEFVVRGVKH 60
61 LFKDNVVLQF NITNTLTDIA LDNVSVVCTP EISDEAELE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.515 | 0.493 | retrograde vesicle-mediated transport, Golgi to ER | c.47.1 | Thioredoxin-like |
| View | Download | 0.469 | 0.089 | retrograde vesicle-mediated transport, Golgi to ER | b.43.4 | Riboflavin synthase domain-like |
| View | Download | 0.467 | 0.028 | retrograde vesicle-mediated transport, Golgi to ER | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.562 | N/A | N/A | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.554 | N/A | N/A | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.467 | N/A | N/A | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.459 | N/A | N/A | d.41.3 | Pyrimidine nucleoside phosphorylase C-terminal domain |
| View | Download | 0.458 | N/A | N/A | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.450 | N/A | N/A | d.17.1 | Cystatin/monellin |
| View | Download | 0.410 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.394 | N/A | N/A | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.383 | N/A | N/A | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.379 | N/A | N/A | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.370 | N/A | N/A | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.362 | N/A | N/A | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.360 | N/A | N/A | c.47.2 | RNA 3'-terminal phosphate cyclase, RPTC, insert domain |
| View | Download | 0.347 | N/A | N/A | b.60.1 | Lipocalins |
| View | Download | 0.343 | N/A | N/A | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.342 | N/A | N/A | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.320 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.318 | N/A | N/A | b.43.4 | Riboflavin synthase domain-like |
| View | Download | 0.311 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.310 | N/A | N/A | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.296 | N/A | N/A | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.296 | N/A | N/A | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.294 | N/A | N/A | a.60.2 | RuvA domain 2-like |
| View | Download | 0.289 | N/A | N/A | b.1.18 | E set domains |
| View | Download | 0.288 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.281 | N/A | N/A | d.50.2 | Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain |
| View | Download | 0.276 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.256 | N/A | N/A | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.253 | N/A | N/A | d.131.1 | DNA clamp |
| View | Download | 0.247 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.243 | N/A | N/A | d.24.1 | Pili subunits |
| View | Download | 0.221 | N/A | N/A | b.61.1 | Avidin/streptavidin |
| View | Download | 0.221 | N/A | N/A | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.205 | N/A | N/A | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.200 | N/A | N/A | d.58.17 | Metal-binding domain |
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Region A: Residues: [750-935] |
1 11 21 31 41 51
| | | | | |
1 ELFTLQVDRL LPSEEAACYV AFKKLDEIVM EGFLNNLTFT TKEINPDTNE PFDGDEGFQD 60
61 EYEIDSIFLN AGDYVKSSFT GNFSATFDEL PCEEVAVFNI QEDLSIQEVV DKIILNSSCL 120
121 PVESTQFAPS DSNSHTLKLF GKSALTGSKV ALQIKMIKSS KGLALKVHGK GEDSLLCSDL 180
181 VNGLMQ
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
