| Protein: | RRP9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 573 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP9.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..572] | [1042..1688] |
|
|
0.0 | [72..572] | [939..1464] |
|
|
0.0 | [108..571] | [823..1304] |
|
Region A: Residues: [1-59] |
1 11 21 31 41 51
| | | | | |
1 MSDVTQQKKR KRSKGEVNPS KPTVDEEITD PSSNEDEQLE VSDEEDALES EEEFEGENP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [60-140] |
1 11 21 31 41 51
| | | | | |
1 ADKRRRLAKQ YLENLKSEAN DILTDNRNAE EKDLNNLKER TIDEYNNFDA GDLDKDIIAS 60
61 RLKEDVAEQQ GRVFRYFGDK L
|
| Detection Method: | |
| Confidence: | 129.68867 |
| Match: | 1nexB_ |
| Description: | Cdc4 F-box and linker domains; Cdc4 propeller domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [141-434] |
1 11 21 31 41 51
| | | | | |
1 LISEAKQSFT RVGENNLTCI SCFQPVLNKY TFEESSNGDK NKGRLFAYTV SKDLQLTKYD 60
61 ITDFSKRPKK LKYAKGGAKY IPTSKHEYEN TTEGHYDEIL TVAASPDGKY VVTGGRDRKL 120
121 IVWSTESLSP VKVIPTKDRR GEVLSLAFRK NSDQLYASCA DFKIRTYSIN QFSQLEILYG 180
181 HHDIVEDISA LAMERCVTVG ARDRTAMLWK IPDETRLTFR GGDEPQKLLR RWMKENAKEG 240
241 EDGEVKYPDE SEAPLFFCEG SIDVVSMVDD FHFITGSDNG NICLWSLAKK KPIF
|
| Detection Method: | |
| Confidence: | 129.68867 |
| Match: | 1nexB_ |
| Description: | Cdc4 F-box and linker domains; Cdc4 propeller domain |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [435-502] |
1 11 21 31 41 51
| | | | | |
1 TERIAHGILP EPSFNDISGE TDEELRKRQL QGKKLLQPFW ITSLYAIPYS NVFISGSWSG 60
61 SLKVWKIS
|
| Detection Method: | |
| Confidence: | 123.927757 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [503-573] |
1 11 21 31 41 51
| | | | | |
1 DNLRSFELLG ELSGAKGVVT KIQVVESGKH GKEKFRILAS IAKEHRLGRW IANVSGARNG 60
61 IYSAVIDQTG F
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.690 | 0.859 | small nuclear ribonucleoprotein complex | d.58.7 | RNA-binding domain, RBD |
