Protein: | RRP9 |
Organism: | Saccharomyces cerevisiae |
Length: | 573 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP9.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..572] | [1042..1688] |
|
0.0 | [72..572] | [939..1464] |
|
0.0 | [108..571] | [823..1304] |
Region A: Residues: [1-59] |
1 11 21 31 41 51 | | | | | | 1 MSDVTQQKKR KRSKGEVNPS KPTVDEEITD PSSNEDEQLE VSDEEDALES EEEFEGENP |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.316 | a.4.1 | Homeodomain-like |
View | Download | 0.647 | a.16.1 | S15/NS1 RNA-binding domain |
View | Download | 0.321 | a.6.1 | Putative DNA-binding domain |
View | Download | 0.296 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.433 | d.48.1 | RecA protein, C-terminal domain |
View | Download | 0.280 | a.76.1 | Iron-dependent represor protein, dimerization domain |
View | Download | 0.274 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
View | Download | 0.274 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
View | Download | 0.270 | g.57.1 | Serine proteinase inhibitor lekti |
View | Download | 0.253 | a.5.2 | UBA-like |
View | Download | 0.235 | a.4.1 | Homeodomain-like |
View | Download | 0.216 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
View | Download | 0.206 | a.64.2 | Bacteriocin AS-48 |
Region A: Residues: [60-140] |
1 11 21 31 41 51 | | | | | | 1 ADKRRRLAKQ YLENLKSEAN DILTDNRNAE EKDLNNLKER TIDEYNNFDA GDLDKDIIAS 60 61 RLKEDVAEQQ GRVFRYFGDK L |
Detection Method: | |
Confidence: | 129.68867 |
Match: | 1nexB_ |
Description: | Cdc4 F-box and linker domains; Cdc4 propeller domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [141-434] |
1 11 21 31 41 51 | | | | | | 1 LISEAKQSFT RVGENNLTCI SCFQPVLNKY TFEESSNGDK NKGRLFAYTV SKDLQLTKYD 60 61 ITDFSKRPKK LKYAKGGAKY IPTSKHEYEN TTEGHYDEIL TVAASPDGKY VVTGGRDRKL 120 121 IVWSTESLSP VKVIPTKDRR GEVLSLAFRK NSDQLYASCA DFKIRTYSIN QFSQLEILYG 180 181 HHDIVEDISA LAMERCVTVG ARDRTAMLWK IPDETRLTFR GGDEPQKLLR RWMKENAKEG 240 241 EDGEVKYPDE SEAPLFFCEG SIDVVSMVDD FHFITGSDNG NICLWSLAKK KPIF |
Detection Method: | |
Confidence: | 129.68867 |
Match: | 1nexB_ |
Description: | Cdc4 F-box and linker domains; Cdc4 propeller domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [435-502] |
1 11 21 31 41 51 | | | | | | 1 TERIAHGILP EPSFNDISGE TDEELRKRQL QGKKLLQPFW ITSLYAIPYS NVFISGSWSG 60 61 SLKVWKIS |
Detection Method: | |
Confidence: | 123.927757 |
Match: | 1erjA_ |
Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [503-573] |
1 11 21 31 41 51 | | | | | | 1 DNLRSFELLG ELSGAKGVVT KIQVVESGKH GKEKFRILAS IAKEHRLGRW IANVSGARNG 60 61 IYSAVIDQTG F |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.