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Protein Overview: YHR080C

General Information:
Name(s) found: YHR080C [SGD]
Description(s) found:
Found 24 descriptions.
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  • Protein of unknown function that may interact with ribosomes, based on co-purification experiments; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 1345 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed articleLink to PubMed article]
    ribosome [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRDSKKKHH WGTAFLRTIG VKRKHKKDRN FLNNTTGENV STTASAERFR RVGGNPDIPS  60
   61 LLKPETFTES PAKGSQKAAA SSLAHSQGVF NIPIVIDPME TNRLEKTNTN LTAGSLKGRF 120
  121 QDGNSNSNSV PSLSVQALEK EKLQSGKREG SSNQAEEKTP DGHDEHTAFE TFLSFAHNAV 180
  181 SHIPKINVQD ADNGTISRNE PKDRKKNSSN ISGALSENST NNKNTSSTKE SDGPFLKNLD 240
  241 NILAASKSST PSNQQLNTTE AGSKSKPSSL SRLAFGNLKG HIHSNSHSSS NAISGDDTSL 300
  301 DDTRKMTDDM ARKVVFEPIR HSHDKPTPGV GNLKLEHFDD SQATLEGLEA MSAESLPEAD 360
  361 HLDSRGPVQQ SNLERKTVPS KWSVVSSSTT DGVKPRRRAK SMISAMADKQ NTSSDVLQDC 420
  421 KKRLSFNSSN GLTNNDPEYE DREPREMSKK FLNRRSFSPG SISMGMKVLP STALKYSLNK 480
  481 VKNSTDIAST IIPRPSMSNG RPSSGLRRSS SKSFSSTPVN IIEPSEENGR QSSIRIKGVE 540
  541 YASEKKDAEF HAIFKDSGVS PNERLILDHS CALSRDILLQ GRMYISDQHI GFYSNILGWV 600
  601 STVFIPFKTI VQIEKRATAG IFPNGIVIDT LHTKYTFASF TSRDATYDLI TEVWNQIILG 660
  661 KRFRSNSNNT NSSSNSISDD ENDDYDDDYD DYGDDDDDLY DNSNNISDST DMTSSVSIGK 720
  721 PEDLPMPLQT DTPYGTGIPP LGPKIHSPTE TVYKPAPNEK LVNESTIHAS LGRVVNILFG 780
  781 KDVSYIMAIL KAQKNSDISP IPVLVDSPTV SEGKKRDYSY VKTTPGAIGP GKTKCMITET 840
  841 IQHFNLEEYV QVLQTTKTPD VPSGNSFYVR TVYLLSWANN NETKLKLYVS VEWTGKSLIK 900
  901 SPIEKGTFDG VTDATKILVE ELGNILTRSA TKRKRSSKEN TVTVSTLPKM EPSSHAPTEP 960
  961 DIQKDKDDSI IRENENIPAP LGTVVQLLFG SNTEYMQKVI TRDKNNVNVE TIPKFTPSLV1020
 1021 EGGSRHYEYT KKLNNSIGPK QTKCLLTESI EHMDINNYVL VTQTTKTPDV PSGSNFAVES1080
 1081 KIFLFWGQHD TTNMTVITKI NWTSKSFLKG AIEKGSVEGQ KVSVDYMLSE LRDIISRAKS1140
 1141 KKPVKKVMKS HDKHRPFHSK VEQKSSESRK SDDNKDILTH ILDFVQNNFS SEIFMNKLLS1200
 1201 PQKLFLILGL TIMLFWSPRL HVFQEKNNLQ IIKPGRLLID GQEYNYVPSF GTLYNSYENA1260
 1261 ISSKKKRENV NYARDKSPIV GRESDIWDWI SNRGSAISPR GRAMLRNDDE HKLQQLSESI1320
 1321 KITEMQLNHM KTMLDNIERD ANDLS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #14 Mitotic Prep2-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..546] MSA 62.530997 View MSA. No confident structure predictions are available.
    2 View Details [547..664] Pfam 24.585027 GRAM domain No confident structure predictions are available.
    3 View Details [665..957] MSA 2.029965 View MSA. No confident structure predictions are available.
    4 View Details [958..1038] deduced N/A No confident structure predictions are available.
    5 View Details [1039..1345] MSA 1.008989 View MSA. No confident structure predictions are available.
    6 View Details [958..1040] deduced N/A No confident structure predictions are available.
    7 View Details [1041..1226] MSA 1.010958 View MSA. No confident structure predictions are available.
    8 View Details [1227..1345] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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