YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: VIK1

General Information:
Name(s) found: VIK1 / YPL253C [SGD]
Description(s) found:
Found 25 descriptions.
SHOW ALL
  • Protein that forms a complex with Kar3p at the spindle pole body, possible regulator of Kar3p function in microtubule-mediated processes; required for sister chromatid cohesion; has similarity to Cik1p [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 647 amino acids

    Gene Ontology:
    Cellular Component: spindle pole body [IDALink to PubMed articleLink to PubMed article]
    kinesin complex [IDALink to PubMed article]
    Biological Process: mitotic sister chromatid cohesion [IGILink to PubMed article][IMPLink to PubMed article]
    microtubule-based process [IMPLink to PubMed article][IPILink to PubMed article]
    Molecular Function: microtubule motor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQQNKHAF LSKNRIFHNP DNVSSSKSRN LMDITNTTNT MNGSRPSSMK SSLALPPVKD  60
   61 SFPSVSRSAS LNINMSKIKD LKDRQDKIRF QRHTLRTQLI ECEREIKTIK FRDLNKSRFE 120
  121 LYKKKSKQAK YLKQVRDLTQ NLNSKDGERA DLIKKNKSAL ATLQAELDQN LILKRQESQE 180
  181 LYNNKLIFWE NELQIMENVE PDHEITEEIS QLKKTLQELN INWANLQKQN LERQVNHESQ 240
  241 LRKDFIAFKE AKLKSMENLT NKHRELLDQI ATLQSESEKL HKEIMDIDRQ AEYSEQNISE 300
  301 INENIKQLEL ANNPLISKSL QNSQDLEHLQ NQMENLKEMA SKQEKFYNDT YNTVEKELLR 360
  361 SRRLENSIIE QKGTMRCYAY VMEQNLPENL LFDYENGVIT QGLSEHVYKF NRVIPHLKVS 420
  421 EDKFFTQEYS VYHDMCLNQK KNFNLISLST TPHGSLRESL IKFLAEKDTI YQKQYVITLQ 480
  481 FVFLSDDEFS QDMLLDYSHN DKDSIKLKFE KHSISLDSKL VIIENGLEDL PLNFSCDEHP 540
  541 NLPHSGMGII KVQFFPRDSK SDGNNDPVPV DFYFIELNNL KSIEQFDKSI FKKESCETPI 600
  601 ALVLKKLISD TKSFFLLNLN DSKNVNKLLT ISEEVQTQLC KRKKKLT

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) CIK1 CIN8 DYN1 DYN3 KAR3 KIP1 KIP2 STU1 VIK1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run NSL1 No Comments Hazbun TR, et al. (2003)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen VIK1 YER159C-A, YDR31... 2 Uetz P, et al. (2000)

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..345] PSI-BLAST 20.0 Heavy meromyosin subfragment
    2 View Details [346..406] PSI-BLAST 9.69897 Tropomyosin
    3 View Details [407..466] PSI-BLAST 9.69897 Tropomyosin
    4 View Details [467..564] PSI-BLAST 9.69897 Tropomyosin
    5 View Details [565..647] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle