| Protein: | VIK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 647 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VIK1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-77 | [2..526] | [406..935] |
|
|
2.0E-77 | [2..526] | [1409..1938] |
|
Region A: Residues: [1-345] |
1 11 21 31 41 51
| | | | | |
1 MASQQNKHAF LSKNRIFHNP DNVSSSKSRN LMDITNTTNT MNGSRPSSMK SSLALPPVKD 60
61 SFPSVSRSAS LNINMSKIKD LKDRQDKIRF QRHTLRTQLI ECEREIKTIK FRDLNKSRFE 120
121 LYKKKSKQAK YLKQVRDLTQ NLNSKDGERA DLIKKNKSAL ATLQAELDQN LILKRQESQE 180
181 LYNNKLIFWE NELQIMENVE PDHEITEEIS QLKKTLQELN INWANLQKQN LERQVNHESQ 240
241 LRKDFIAFKE AKLKSMENLT NKHRELLDQI ATLQSESEKL HKEIMDIDRQ AEYSEQNISE 300
301 INENIKQLEL ANNPLISKSL QNSQDLEHLQ NQMENLKEMA SKQEK
|
| Detection Method: |  |
| Confidence: | 20.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [346-406] |
1 11 21 31 41 51
| | | | | |
1 FYNDTYNTVE KELLRSRRLE NSIIEQKGTM RCYAYVMEQN LPENLLFDYE NGVITQGLSE 60
61 H
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [407-466] |
1 11 21 31 41 51
| | | | | |
1 VYKFNRVIPH LKVSEDKFFT QEYSVYHDMC LNQKKNFNLI SLSTTPHGSL RESLIKFLAE 60
61
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [467-564] |
1 11 21 31 41 51
| | | | | |
1 KDTIYQKQYV ITLQFVFLSD DEFSQDMLLD YSHNDKDSIK LKFEKHSISL DSKLVIIENG 60
61 LEDLPLNFSC DEHPNLPHSG MGIIKVQFFP RDSKSDGN
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [565-647] |
1 11 21 31 41 51
| | | | | |
1 NDPVPVDFYF IELNNLKSIE QFDKSIFKKE SCETPIALVL KKLISDTKSF FLLNLNDSKN 60
61 VNKLLTISEE VQTQLCKRKK KLT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
