| Protein: | VIK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 647 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VIK1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-77 | [2..526] | [406..935] |
|
|
2.0E-77 | [2..526] | [1409..1938] |
|
Region A: Residues: [1-345] |
1 11 21 31 41 51
| | | | | |
1 MASQQNKHAF LSKNRIFHNP DNVSSSKSRN LMDITNTTNT MNGSRPSSMK SSLALPPVKD 60
61 SFPSVSRSAS LNINMSKIKD LKDRQDKIRF QRHTLRTQLI ECEREIKTIK FRDLNKSRFE 120
121 LYKKKSKQAK YLKQVRDLTQ NLNSKDGERA DLIKKNKSAL ATLQAELDQN LILKRQESQE 180
181 LYNNKLIFWE NELQIMENVE PDHEITEEIS QLKKTLQELN INWANLQKQN LERQVNHESQ 240
241 LRKDFIAFKE AKLKSMENLT NKHRELLDQI ATLQSESEKL HKEIMDIDRQ AEYSEQNISE 300
301 INENIKQLEL ANNPLISKSL QNSQDLEHLQ NQMENLKEMA SKQEK
|
| Detection Method: |  |
| Confidence: | 20.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [346-406] |
1 11 21 31 41 51
| | | | | |
1 FYNDTYNTVE KELLRSRRLE NSIIEQKGTM RCYAYVMEQN LPENLLFDYE NGVITQGLSE 60
61 H
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [407-466] |
1 11 21 31 41 51
| | | | | |
1 VYKFNRVIPH LKVSEDKFFT QEYSVYHDMC LNQKKNFNLI SLSTTPHGSL RESLIKFLAE 60
61
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [467-564] |
1 11 21 31 41 51
| | | | | |
1 KDTIYQKQYV ITLQFVFLSD DEFSQDMLLD YSHNDKDSIK LKFEKHSISL DSKLVIIENG 60
61 LEDLPLNFSC DEHPNLPHSG MGIIKVQFFP RDSKSDGN
|
| Detection Method: | |
| Confidence: | 9.69897 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [565-647] |
1 11 21 31 41 51
| | | | | |
1 NDPVPVDFYF IELNNLKSIE QFDKSIFKKE SCETPIALVL KKLISDTKSF FLLNLNDSKN 60
61 VNKLLTISEE VQTQLCKRKK KLT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.496 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.518 | d.42.1 | POZ domain |
| View | Download | 0.513 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.678 | d.226.1 | GIY-YIG endonuclease |
| View | Download | 0.533 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.489 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.461 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.438 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.432 | a.118.8 | TPR-like |
| View | Download | 0.430 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.401 | d.45.1 | ClpS-like |
| View | Download | 0.381 | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.356 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.354 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.353 | d.94.1 | HPr-like |
| View | Download | 0.352 | a.118.1 | ARM repeat |
| View | Download | 0.335 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.323 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.320 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.313 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.304 | a.4.1 | Homeodomain-like |
| View | Download | 0.292 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.291 | d.58.17 | Metal-binding domain |
| View | Download | 0.291 | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.285 | a.112.1 | Description not found. |
| View | Download | 0.281 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.280 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.278 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.276 | c.55.4 | Translational machinery components |
| View | Download | 0.267 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.261 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.259 | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.256 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.252 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.247 | a.65.1 | Annexin |
| View | Download | 0.229 | c.49.1 | Pyruvate kinase, C-terminal domain |
| View | Download | 0.224 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.224 | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.216 | d.58.35 | Pseudouridine synthase |
| View | Download | 0.216 | a.74.1 | Cyclin-like |
| View | Download | 0.213 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.210 | d.42.1 | POZ domain |
| View | Download | 0.200 | f.14.1 | Voltage-gated potassium channels |
