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Protein Overview: RPC82

General Information:
Name(s) found: RPC82 / YPR190C [SGD]
Description(s) found:
Found 23 descriptions.
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  • RNA polymerase III subunit C82 [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 654 amino acids

    Gene Ontology:
    Cellular Component: DNA-directed RNA polymerase III complex [TASLink to PubMed article]
    Biological Process: transcription from RNA polymerase III promoter [TAS]
    ribosome biogenesis [RCALink to PubMed article]
    Molecular Function: DNA-directed RNA polymerase activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDELLGEALS AENQTGESTV ESEKLVTPED VMTISSLEQR TLNPDLFLYK ELVKAHLGER  60
   61 AASVIGMLVA LGRLSVRELV EKIDGMDVDS VKTTLVSLTQ LRCVKYLQET AISGKKTTYY 120
  121 YYNEEGIHIL LYSGLIIDEI ITQMRVNDEE EHKQLVAEIV QNVISLGSLT VEDYLSSVTS 180
  181 DSMKYTISSL FVQLCEMGYL IQISKLHYTP IEDLWQFLYE KHYKNIPRNS PLSDLKKRSQ 240
  241 AKMNAKTDFA KIINKPNELS QILTVDPKTS LRIVKPTVSL TINLDRFMKG RRSKQLINLA 300
  301 KTRVGSVTAQ VYKIALRLTE QKSPKIRDPL TQTGLLQDLE EAKSFQDEAE LVEEKTPGLT 360
  361 FNAIDLARHL PAELDLRGSL LSRKPSDNKK RSGSNAAASL PSKKLKTEDG FVIPALPAAV 420
  421 SKSLQESGDT QEEDEEEEDL DADTEDPHSA SLINSHLKIL ASSNFPFLNE TKPGVYYVPY 480
  481 SKLMPVLKSS VYEYVIASTL GPSAMRLSRC IRDNKLVSEK IINSTALMKE KDIRSTLASL 540
  541 IRYNSVEIQE VPRTADRSAS RAVFLFRCKE THSYNFMRQN LEWNMANLLF KKEKLKQENS 600
  601 TLLKKANRDD VKGRENELLL PSELNQLKMV NERELNVFAR LSRLLSLWEV FQMA

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) RET1 RPA135 RPA190 RPB10 RPB5 RPB8 RPC11 RPC17 RPC19 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO26 RPO31
    View Details (MIPS) Mewes HW, et al. (2004) RET1 RPB10 RPB5 RPB8 RPC10 RPC19 RPC25 RPC31 RPC34 RPC40 RPC82 RPO26 RPO31
    View Details Krogan NJ, et al. (2006) BDP1 CDC14 COY1 FAR7 MAF1 RET1 RPA12 RPA135 RPA14 RPA190 RPA34 RPA43 RPA49 RPC10 RPC11 RPC17 RPC19 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO31 YDL144C YIR024C
    View Details Gavin AC, et al. (2006) RET1 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO31
    View Details Gavin AC, et al. (2002) AMS1 ASC1 CDC14 DHH1 DPB2 DPB4 FBA1 ISW1 ISW2 KAP114 MAF1 MOT1 NAP1 NPL6 POL2 PUF6 RET1 RPA12 RPA135 RPA190 RPA43 RPA49 RPB10 RPB5 RPB8 RPC11 RPC17 RPC19 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO26 RPO31 RSC8 SRO7 STH1 TOP1 VPS1
    View Details Ho Y, et al. (2002) ACC1 ACH1 ACO1 ADH2 ADR1 AI1 AIM13 CLU1 FUN12 GCD11 GFA1 GND1 GUS1 HHF1, HHF2 HHO1 HIR2 HTA1 HTB1 IDH2 IMD2 IMD3 IMD4 ISA2 KAP114 KRI1 MAG1 MDH1 MET18 MPH1 MSH2 NAP1 NGL2 NOP12 NOP4 NOP7 PYC1 PYC2 RET1 RPA135 RPA190 RPA49 RPB5 RPC19 RPC25 RPC34 RPC40 RPC82 RPN3 RPO26 RPO31 RVS167 SEC27 SPT16 TBS1 TFP1 TIF4631 TIF4632 TOP1 TSA2 UTP13 UTP22 YFL042C YHR112C
    View Details Qiu et al. (2008) RET1 RPA12 RPA14 RPA190 RPA34 RPA43 RPB10 RPB11 RPB2 RPB3 RPB5 RPB8 RPC10 RPC11 RPC17 RPC19 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO21 RPO26 RPO31

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data RPC82 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] Pfam 25.455932 No description for PF08221.2 was found. Confident ab initio structure predictions are available.
    2 View Details [145..275] deduced N/A No confident structure predictions are available.
    3 View Details [276..471] deduced N/A No confident structure predictions are available.
    4 View Details [472..598] FFAS03 1.16 An extended winged helix domain in general transcription factor E/IIE alpha
    5 View Details [599..654] MSA 1.037994 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle