| Protein: | RPC82 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 654 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC82.
| Description | E-value | Query Range |
Subject Range |
|
|
757.0 | [0..1] | [654..1] |
|
|
535.0 | [0..46] | [652..6] |
|
|
518.0 | [0..49] | [652..11] |
|
|
421.0 | [0..291] | [652..101] |
|
|
418.0 | [0..291] | [652..17] |
|
|
417.0 | [0..291] | [652..101] |
|
|
417.0 | [0..290] | [652..100] |
|
|
416.0 | [0..291] | [652..101] |
|
Region A: Residues: [1-144] |
1 11 21 31 41 51
| | | | | |
1 MDELLGEALS AENQTGESTV ESEKLVTPED VMTISSLEQR TLNPDLFLYK ELVKAHLGER 60
61 AASVIGMLVA LGRLSVRELV EKIDGMDVDS VKTTLVSLTQ LRCVKYLQET AISGKKTTYY 120
121 YYNEEGIHIL LYSGLIIDEI ITQM
|
| Detection Method: |  |
| Confidence: | 25.455932 |
| Match: | PF08221.2 |
| Description: | No description for PF08221.2 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.842 | N/A | N/A | a.4.3 | ARID-like |
|
Region A: Residues: [145-275] |
1 11 21 31 41 51
| | | | | |
1 RVNDEEEHKQ LVAEIVQNVI SLGSLTVEDY LSSVTSDSMK YTISSLFVQL CEMGYLIQIS 60
61 KLHYTPIEDL WQFLYEKHYK NIPRNSPLSD LKKRSQAKMN AKTDFAKIIN KPNELSQILT 120
121 VDPKTSLRIV K
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [276-471] |
1 11 21 31 41 51
| | | | | |
1 PTVSLTINLD RFMKGRRSKQ LINLAKTRVG SVTAQVYKIA LRLTEQKSPK IRDPLTQTGL 60
61 LQDLEEAKSF QDEAELVEEK TPGLTFNAID LARHLPAELD LRGSLLSRKP SDNKKRSGSN 120
121 AAASLPSKKL KTEDGFVIPA LPAAVSKSLQ ESGDTQEEDE EEEDLDADTE DPHSASLINS 180
181 HLKILASSNF PFLNET
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [472-598] |
1 11 21 31 41 51
| | | | | |
1 KPGVYYVPYS KLMPVLKSSV YEYVIASTLG PSAMRLSRCI RDNKLVSEKI INSTALMKEK 60
61 DIRSTLASLI RYNSVEIQEV PRTADRSASR AVFLFRCKET HSYNFMRQNL EWNMANLLFK 120
121 KEKLKQE
|
| Detection Method: | |
| Confidence: | 1.16 |
| Match: | 1q1hA |
| Description: | An extended winged helix domain in general transcription factor E/IIE alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [599-654] |
1 11 21 31 41 51
| | | | | |
1 NSTLLKKANR DDVKGRENEL LLPSELNQLK MVNERELNVF ARLSRLLSLW EVFQMA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
