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Protein Overview: ROM1

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..268] ORFEUS 12.1 RBP1
2 View Details [269..400] Pfam 16.721246 Domain found in Dishevelled, Egl-10, and Pleckstrin No confident structure predictions are available.
3 View Details [401..455] deduced N/A No confident structure predictions are available.
4 View Details [456..654] PSI-BLAST 160.927757 GEF of intersectin
5 View Details [655..839] PSI-BLAST 160.927757 GEF of intersectin
6 View Details [840..1155] Pfam 89.60206 CNH domain No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3
Term Confidence Notes
  • binding
  • 2.73671056234733 bayes_pls_golite062009
  • transcription regulator activity
  • 2.39919853201545 bayes_pls_golite062009
  • DNA binding
  • 2.16143325457938 bayes_pls_golite062009
  • nucleic acid binding
  • 2.09113880936999 bayes_pls_golite062009
  • transcription factor activity
  • 1.54168457775536 bayes_pls_golite062009
  • protein binding
  • 0.726445167461826 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.287205124844904 bayes_pls_golite062009
  • transcription activator activity
  • 0.125095059983242 bayes_pls_golite062009
  • transcription repressor activity
  • 0.0268276479020184 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
  • 1.74397599086046 bayes_pls_golite062009
  • protein binding
  • 1.14503622489775 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 0.628909211572624 bayes_pls_golite062009
  • actin binding
  • 0.451110433048089 bayes_pls_golite062009
  • enzyme regulator activity
  • 0.149708921127291 bayes_pls_golite062009
    6 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle