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Protein Overview: SCW10

General Information:
Name(s) found: SCW10 / YMR305C [SGD]
Description(s) found:
Found 22 descriptions.
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  • Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on mutant phenotype and its regulation by Ste12p [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 389 amino acids

    Gene Ontology:
    Cellular Component: fungal-type cell wall [IDALink to PubMed articleLink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    Biological Process: conjugation with cellular fusion [IGILink to PubMed article]
    Molecular Function: glucosidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSNFLTVS ALLTGALGAP AVRHKHEKRD VVTATVHAQV TVVVSGNSGE TIVPVNENAV  60
   61 VATTSSTAVA SQATTSTLEP TTSANVVTSQ QQTSTLQSSE AASTVGSSTS SSPSSSSSTS 120
  121 SSASSSASSS ISASGAKGIT YSPYNDDGSC KSTAQVASDL EQLTGFDNIR LYGVDCSQVE 180
  181 NVLQAKTSSQ KLFLGIYYVD KIQDAVDTIK SAVESYGSWD DITTVSVGNE LVNGGSATTT 240
  241 QVGEYVSTAK SALTSAGYTG SVVSVDTFIA VINNPDLCNY SDYMAVNAHA YFDENTAAQD 300
  301 AGPWVLEQIE RVYTACGGKK DVVITETGWP SKGDTYGEAV PSKANQEAAI SSIKSSCGSS 360
  361 AYLFTAFNDL WKDDGQYGVE KYWGILSSD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data SCW10 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] MSA 1.004993 View MSA. No confident structure predictions are available.
    2 View Details [102..389] PSI-BLAST 102.0 Plant beta-glucanases

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity, acting on glycosyl bonds
    		•  5.36248919165223 bayes_pls_golite062009
  • glucan 1,3-beta-glucosidase activity
    		•  5.16200085143699 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  4.55801959095491 bayes_pls_golite062009
  • hydrolase activity
    		•  4.05312354194822 bayes_pls_golite062009
  • glucosidase activity
    		•  3.69195576225095 bayes_pls_golite062009
  • beta-glucosidase activity
    		•  3.14931331494576 bayes_pls_golite062009
  • chitinase activity
    		•  2.45357334610104 bayes_pls_golite062009
  • alpha-amylase activity
    		•  2.09193270404736 bayes_pls_golite062009
  • amylase activity
    		•  2.03484942782894 bayes_pls_golite062009
  • catalytic activity
    		•  1.85569074294201 bayes_pls_golite062009
  • hexosaminidase activity
    		•  0.763360027922833 bayes_pls_golite062009
  • receptor binding
    		•  0.709153600415243 bayes_pls_golite062009
  • binding
    		•  0.601963252939415 bayes_pls_golite062009
  • alpha-glucosidase activity
    		•  0.502835520523619 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.45065632894721 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  0.266938437560648 bayes_pls_golite062009
  • beta-N-acetylhexosaminidase activity
    		•  0.263065978664289 bayes_pls_golite062009
  • signal transducer activity
    		•  0.204404145728779 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.204404145728779 bayes_pls_golite062009
  • hyalurononglucosaminidase activity
    		•  0.123700697143861 bayes_pls_golite062009
  • pattern binding
    		•  0.113396113487931 bayes_pls_golite062009
  • polysaccharide binding
    		•  0.10746671207581 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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