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Protein Overview: YLR108C

General Information:
Name(s) found: YLR108C [SGD]
Description(s) found:
Found 27 descriptions.
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  • Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YLR108C is not an esssential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 485 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQKGEIVV YTKELETTPE LLPNHEVFKI RIGQKLFEIS GATLNSDAPN FFTQFFNTHD  60
   61 KNTILFVDRS EDVFIIIYRH LQGYFPDIKN EVQFTCLFAD ALYFQLPKLV KLIKEYDYHF 120
  121 TNIGGVPFKV PKSLFHEEGN RLNYFETISR ISYEEIEKWE SNKKPGFPPL LPPSYIARSP 180
  181 EFFRDILSLL GGSKLELSEE RTASLIKECR YYRLNRLEQE LVRAKIIYNP LTNCQEVCIA 240
  241 LDSVSKKGVT IERLTSLHTG NQSLAVSSCL NGTEGEKAAT GFHKTETDSG NNDEYEPPTK 300
  301 KVKHCIERHW SMLKYQRPYI DTVSHDLIFQ LHSNQCKIIF NKKNKTVHVD LSREAAVLFE 360
  361 NKFSDVLLEN PDFKIDLSEY KVKLRDSQMQ VESHLIIPAC VSICDLTVNG AKCCNIFSLV 420
  421 NDSKCKGRVL DCTNLKVLNC VHGLKLHLSK SMWKLGTNNG RIILVAVKAE TFSGTKEYCK 480
  481 MIDFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YLR108C Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..165] Pfam 3.537602 K+ channel tetramerisation domain No confident structure predictions are available.
    2 View Details [166..485] deduced N/A No confident structure predictions are available.
    3 View Details [344..485] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle