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View Structure Prediction Details

Protein: YLR108C
Organism: Saccharomyces cerevisiae
Length: 485 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR108C.

Description E-value Query
Range
Subject
Range
YL108_YEAST - BTB/POZ domain-containing protein YLR108C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
YLR108C - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus...
0.0 [1..485] [1..485]

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Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQKGEIVV YTKELETTPE LLPNHEVFKI RIGQKLFEIS GATLNSDAPN FFTQFFNTHD  60
   61 KNTILFVDRS EDVFIIIYRH LQGYFPDIKN EVQFTCLFAD ALYFQLPKLV KLIKEYDYHF 120
  121 TNIGGVPFKV PKSLFHEEGN RLNYFETISR ISYEEIEKWE SNKKP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.537602
Match: PF02214
Description: K+ channel tetramerisation domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [166-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFPPLLPPSY IARSPEFFRD ILSLLGGSKL ELSEERTASL IKECRYYRLN RLEQELVRAK  60
   61 IIYNPLTNCQ EVCIALDSVS KKGVTIERLT SLHTGNQSLA VSSCLNGTEG EKAATGFHKT 120
  121 ETDSGNNDEY EPPTKKVKHC IERHWSMLKY QRPYIDTVSH DLIFQLHSNQ CKIIFNKKNK 180
  181 TVHVDLSREA AVLFENKFSD VLLENPDFKI DLSEYKVKLR DSQMQVESHL IIPACVSICD 240
  241 LTVNGAKCCN IFSLVNDSKC KGRVLDCTNL KVLNCVHGLK LHLSKSMWKL GTNNGRIILV 300
  301 AVKAETFSGT KEYCKMIDFL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [344-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKTVHVDLSR EAAVLFENKF SDVLLENPDF KIDLSEYKVK LRDSQMQVES HLIIPACVSI  60
   61 CDLTVNGAKC CNIFSLVNDS KCKGRVLDCT NLKVLNCVHG LKLHLSKSMW KLGTNNGRII 120
  121 LVAVKAETFS GTKEYCKMID FL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle