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Protein Overview: RKR1

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..350] MSA 3.008922 View MSA. No confident structure predictions are available.
2 View Details [351..1449] deduced N/A No confident structure predictions are available.
3 View Details [1450..1562] PSI-BLAST 3.0 Not-4 N-terminal RING finger domain
4 View Details [1015..1226] deduced N/A No confident structure predictions are available.
5 View Details [1227..1480] deduced N/A No confident structure predictions are available.
6 View Details [1481..1562] PSI-BLAST 15.0 Solution structure of RING finger in RING finger protein 38

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • structural molecule activity
  • 3.1588260193851 bayes_pls_golite062009
  • binding
  • 2.96084803796407 bayes_pls_golite062009
  • nucleic acid binding
  • 2.69616509670156 bayes_pls_golite062009
  • transcription regulator activity
  • 2.19067997822967 bayes_pls_golite062009
  • DNA binding
  • 1.96172460362671 bayes_pls_golite062009
  • RNA binding
  • 1.82387912821611 bayes_pls_golite062009
  • protein binding
  • 1.61131270705552 bayes_pls_golite062009
  • transcription factor activity
  • 1.21493607378314 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 0.66737572008694 bayes_pls_golite062009
  • protein kinase activity
  • 0.317596068919701 bayes_pls_golite062009
  • mRNA binding
  • 0.242562403827776 bayes_pls_golite062009
  • transcription activator activity
  • 0.142253868848261 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.0926408709390653 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
  • 0.0799207008328691 bayes_pls_golite062009
  • kinase activity
  • 0.0378340928609381 bayes_pls_golite062009
  • transcription factor binding
  • 8.79739237675814E-4 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle