| Protein: | RKR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1562 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RKR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1562] | [1..1562] |
|
|
0.0 | [782..1558] | [1019..1817] |
|
|
0.0 | [947..1560] | [1021..1609] |
|
|
6.0E-89 | [18..347] | [33..379] |
|
Region A: Residues: [1-350] |
1 11 21 31 41 51
| | | | | |
1 MSFGGINTFQ QYNTDLGLGH NGVRISLNYF DGLPDPSLLN SLYSNELKLI FKSLLKRDET 60
61 TKEKALMDLS NLISDFNQNE YFFNDIFLLC WSQIYAKLII SDYKVIRLQS HQITIMLVKS 120
121 LRKKISKFLK DFIPLILLGT CELDYSVSKP SLNELTECFN KDPAKINALW AVFQEQLLNL 180
181 VKEIVVNENE DTISDERYSS KEESEFRYHR VIASAVLLLI KLFVHNKDVS ERNSSSLKVI 240
241 LSDESIWKLL NLKNGQNTNA YETVLRLIDV LYTRGYMPSH KNIMKLAVKK LLKSLTHITS 300
301 KNILKVCPVL PSILNLLATL DDYEDGTIWS YDKSSKEKVL KFLSVSRTSP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| structural molecule activity | 3.1588260193851 | bayes_pls_golite062009 |
| binding | 2.96084803796407 | bayes_pls_golite062009 |
| nucleic acid binding | 2.69616509670156 | bayes_pls_golite062009 |
| transcription regulator activity | 2.19067997822967 | bayes_pls_golite062009 |
| DNA binding | 1.96172460362671 | bayes_pls_golite062009 |
| RNA binding | 1.82387912821611 | bayes_pls_golite062009 |
| protein binding | 1.61131270705552 | bayes_pls_golite062009 |
| transcription factor activity | 1.21493607378314 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.66737572008694 | bayes_pls_golite062009 |
| protein kinase activity | 0.317596068919701 | bayes_pls_golite062009 |
| mRNA binding | 0.242562403827776 | bayes_pls_golite062009 |
| transcription activator activity | 0.142253868848261 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0926408709390653 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.0799207008328691 | bayes_pls_golite062009 |
| kinase activity | 0.0378340928609381 | bayes_pls_golite062009 |
| transcription factor binding | 8.79739237675814E-4 | bayes_pls_golite062009 |
|
Region A: Residues: [351-1449] |
1 11 21 31 41 51
| | | | | |
1 SPGFFNAVFA LYSSTKRHSF LDYYLEWLPF WQKSVQRLNE KGFSARNSAE VLNEFWTNFL 60
61 KFAEDSSEER VKKMVESEIF NSLSCGKSLS EYTKLNQTLS GVFPPDKWER EIEDYFTSDE 120
121 DIRKIKVSFE KNLFALLVTS PNNESAISRL FDFFVQLIET DPSNVFNKYD GVYDALNYFL 180
181 DSDMIFLNGK IGKFINEIPT LVQESTYQNF AGIMAQYSNS KFFKMNTDAI TSLEDFFIVA 240
241 LSFNLPKTII LATMNELDND IYQQLMKSDS LELELYIEDF MKNYKFDDSG EIFKGNNKFL 300
301 NQRTITTLYR SAVANGQVEQ FCAVLSKLDE TFFSTLLLNT DFLSCALYEV SEDTNEKLFK 360
361 LSLQLAKGNS EIANKLAQVI LQHAQVYFSP GAKEKYVTHA VELINGCNDT SQIFFPANAI 420
421 EVFARYMPAI DYRSSLVSSL STNTHLLLTD DKPINLKNMQ KLIRYALFLD ALLDALPERV 480
481 NNHIVAFITV VSELVTDYNC LSEEPNDLYY DFGHTFFKHG KVNLNFSDIV GNVIQPANGG 540
541 DAMLTFDIAE SNSVYFFYYS RVLYKVLLNS IDTVSSTTLN GLLASVESFV TKTVRDQKST 600
601 DKDYLLCAIL LLMFNRSNSK DEITKLRTLL ASQLIGIREV ELVDQEFKSL ALLNNLLDIP 660
661 QADKQFVPIA PQRLNMIFRS ILKWLDSDLA YEPSFSTVRL LLLDFFTKLM RFEGVRDMGI 720
721 TAFELSERLL ADSLSMCQID DTLYLLELRS SCLNLYETLS QGVSKNGEEI SEYGDEIQEN 780
781 LIELMFLNFN QERNNQVSTL FYQKLYKVIS SMELKKLESQ YKRIFEVVLN DKDIGSNINQ 840
841 SRLLTTLLGS LVVKTQQDII IEYELRIQKQ TGSDVDGSAS DNDVNSKFKL PQKLLQKVTD 900
901 EVPKEYLEYE NKNSFIKYLW YWHLILMYFK DTSYNMRQIF IEQLKEAGLI NRMFDFITDQ 960
961 IDLRDTEFWK QVDTKEISEY NIVGNNFSPY KEDIFEECKK LLGHTLYQLF NNVGCLTSIW1020
1021 WLNIKDRTLQ NDIEKFVSEF ISPILIKNEF DDINSKMDRL TSNDDALTIK LNNITNEVKA1080
1081 SYLIDDQKLE ISFKLPKNY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1450-1562] |
1 11 21 31 41 51
| | | | | |
1 PLTNIQVNGV SRVGISEQKW KQWIMSTQHV ITGMNGSVLD SLELFTKNVH LQFSGFEECA 60
61 ICYSILHAVD RKLPSKTCPT CKNKFHGACL YKWFRSSGNN TCPLCRSEIP FRR
|
| Detection Method: | |
| Confidence: | 3.0 |
| Match: | 1e4uA_ |
| Description: | Not-4 N-terminal RING finger domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1015-1226] |
1 11 21 31 41 51
| | | | | |
1 QFVPIAPQRL NMIFRSILKW LDSDLAYEPS FSTVRLLLLD FFTKLMRFEG VRDMGITAFE 60
61 LSERLLADSL SMCQIDDTLY LLELRSSCLN LYETLSQGVS KNGEEISEYG DEIQENLIEL 120
121 MFLNFNQERN NQVSTLFYQK LYKVISSMEL KKLESQYKRI FEVVLNDKDI GSNINQSRLL 180
181 TTLLGSLVVK TQQDIIIEYE LRIQKQTGSD VD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1227-1480] |
1 11 21 31 41 51
| | | | | |
1 GSASDNDVNS KFKLPQKLLQ KVTDEVPKEY LEYENKNSFI KYLWYWHLIL MYFKDTSYNM 60
61 RQIFIEQLKE AGLINRMFDF ITDQIDLRDT EFWKQVDTKE ISEYNIVGNN FSPYKEDIFE 120
121 ECKKLLGHTL YQLFNNVGCL TSIWWLNIKD RTLQNDIEKF VSEFISPILI KNEFDDINSK 180
181 MDRLTSNDDA LTIKLNNITN EVKASYLIDD QKLEISFKLP KNYPLTNIQV NGVSRVGISE 240
241 QKWKQWIMST QHVI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1481-1562] |
1 11 21 31 41 51
| | | | | |
1 TGMNGSVLDS LELFTKNVHL QFSGFEECAI CYSILHAVDR KLPSKTCPTC KNKFHGACLY 60
61 KWFRSSGNNT CPLCRSEIPF RR
|
| Detection Method: | |
| Confidence: | 15.0 |
| Match: | 1x4jA |
| Description: | Solution structure of RING finger in RING finger protein 38 |
Matching Structure (courtesy of the PDB): |
|
