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Protein Overview: BMS1

General Information:
Name(s) found: BMS1 / YPL217C [SGD]
Description(s) found:
Found 25 descriptions.
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  • GTPase required for synthesis of 40S ribosomal subunits and for processing the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, which stimulates its GTPase and U3 snoRNA binding activities; has similarity to Tsr1p [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 1183 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    mitochondrion [IDALink to PubMed articleLink to PubMed article]
    nuclear outer membrane [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: ribosome assembly [IDALink to PubMed article]
    rRNA processing [IDALink to PubMed article]
    Molecular Function: GTP binding [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQSNKQHRK AKEKNTAKKK LHTQGHNAKA FAVAAPGKMA RTMQRSSDVN ERKLHVPMVD  60
   61 RTPEDDPPPF IVAVVGPPGT GKTTLIRSLV RRMTKSTLND IQGPITVVSG KHRRLTFLEC 120
  121 PADDLNAMID IAKIADLVLL LIDGNFGFEM ETMEFLNIAQ HHGMPRVLGV ATHLDLFKSQ 180
  181 STLRASKKRL KHRFWTEVYQ GAKLFYLSGV INGRYPDREI LNLSRFISVM KFRPLKWRNE 240
  241 HPYMLADRFT DLTHPELIET QGLQIDRKVA IYGYLHGTPL PSAPGTRVHI AGVGDFSVAQ 300
  301 IEKLPDPCPT PFYQQKLDDF EREKMKEEAK ANGEITTAST TRRRKRLDDK DKLIYAPMSD 360
  361 VGGVLMDKDA VYIDIGKKNE EPSFVPGQER GEGEKLMTGL QSVEQSIAEK FDGVGLQLFS 420
  421 NGTELHEVAD HEGMDVESGE ESIEDDEGKS KGRTSLRKPR IYGKPVQEED ADIDNLPSDE 480
  481 EPYTNDDDVQ DSEPRMVEID FNNTGEQGAE KLALETDSEF EESEDEFSWE RTAANKLKKT 540
  541 ESKKRTWNIG KLIYMDNISP EECIRRWRGE DDDSKDESDI EEDVDDDFFR KKDGTVTKEG 600
  601 NKDHAVDLEK FVPYFDTFEK LAKKWKSVDA IKERFLGAGI LGNDNKTKSD SNEGGEELYG 660
  661 DFEDLEDGNP SEQAEDNSDK ESEDEDENED TNGDDDNSFT NFDAEEKKDL TMEQEREMNA 720
  721 AKKEKLRAQF EIEEGENFKE DDENNEYDTW YELQKAKISK QLEINNIEYQ EMTPEQRQRI 780
  781 EGFKAGSYVR IVFEKVPMEF VKNFNPKFPI VMGGLLPTEI KFGIVKARLR RHRWHKKILK 840
  841 TNDPLVLSLG WRRFQTLPIY TTTDSRTRTR MLKYTPEHTY CNAAFYGPLC SPNTPFCGVQ 900
  901 IVANSDTGNG FRIAATGIVE EIDVNIEIVK KLKLVGFPYK IFKNTAFIKD MFSSAMEVAR 960
  961 FEGAQIKTVS GIRGEIKRAL SKPEGHYRAA FEDKILMSDI VILRSWYPVR VKKFYNPVTS1020
 1021 LLLKEKTEWK GLRLTGQIRA AMNLETPSNP DSAYHKIERV ERHFNGLKVP KAVQKELPFK1080
 1081 SQIHQMKPQK KKTYMAKRAV VLGGDEKKAR SFIQKVLTIS KAKDSKRKEQ KASQRKERLK1140
 1141 KLAKMEEEKS QRDKEKKKEY FAQNGKRTTM GGDDESRPRK MRR

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) BFR2 BMS1 DIP2 ECM16 EMG1 ENP1 ENP2 ESF1 HCA4 IMP3 KRE33 KRR1 MPP10 MRD1 NAN1 NOC4 NOP1 NOP14 NOP56 PWP2 RCL1 RPS11A, RPS11B RPS7A RRP12 RRP9 SOF1 UTP10 UTP13 UTP15 UTP20 UTP21 UTP22 UTP30 UTP4 UTP6 UTP7 UTP8
    View Details Krogan NJ, et al. (2006) BMS1 BPL1 RCL1 RNT1 SMF3
    View Details Gavin AC, et al. (2006) BMS1 BUD21 ESF1 MRD1 MVD1 NOP6
    View Details Gavin AC, et al. (2002) ADE4 ARX1 ASC1 BEM2 BFR2 BMS1 BRX1 BUD20 BUD21 CBF5 CFT2 CIC1 CKA1 CKA2 CKB1 CKB2 CLU1 CMS1 CYR1 CYS4 DBP10 DBP8 DBP9 DCP2 DIA4 DIM1 DIP2 DIS3 DRS1 EBP2 ECM16 ECM29 EMG1 ENP1 ENP2 ERB1 ERO1 ESF1 ESF2 FAP7 FIP1 FPR4 GCN1 GLC7 HAS1 HCA4 HDA1 HER1 HHF1, HHF2 HIS3 HSL1 HTA2 IMP3 IMP4 INP2 IPI1 IPI3 KRE33 KRR1 LCP5 LHP1 LOC1 LSG1 LTV1 MAK21 MAK5 MDN1 MIS1 MPP10 MRD1 MRT4 MVD1 NAN1 NAP1 NIP1 NIP7 NMD3 NOB1 NOC2 NOC3 NOC4 NOG1 NOG2 NOP1 NOP12 NOP14 NOP15 NOP16 NOP2 NOP4 NOP56 NOP58 NOP6 NOP7 NSA1 NSA2 NUG1 PAP1 PFS2 PNO1 PRE6 PRE9 PRP43 PRT1 PTA1 PTI1 PUF6 PWP2 RCL1 REF2 REI1 RIX1 RIX7 RLP24 RLP7 RML2 RNA14 ROK1 RPA135 RPA190 RPF1 RPF2 RPG1 RPP2B RPT6 RRP1 RRP12 RRP7 RRP9 RSA3 RSA4 RTG2 RTR1 SAM1 SCL1 SDA1 SEC21 SEC7 SKI2 SLX9 SNU13 SOF1 SPB1 SPB4 SRO9 SSF1 TIF1, TIF2 TIF6 TSR1 TUB3 URB1 UTP10 UTP11 UTP13 UTP15 UTP18 UTP20 UTP21 UTP22 UTP30 UTP4 UTP6 UTP7 UTP8 UTP9 YGL036W YOR059C YSH1 YTM1
    View Details Ho Y, et al. (2002) BMS1 CDC53 CIC1 COF1 CTF4 DBP10 DED81 DIA2 ENP1 FPR3 ILS1 KRE33 KRI1 LST4 MCM2 MCM3 MCM5 NIP7 NMD3 NOP12 RRP12 SEH1 SKP1 SLT2 SPB1 SSF1 SSF2 SSZ1 TIF6 URB1 UTP10 YAK1 YBL104C

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #19 Asynchronous Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #26 Asynchronous Prep4-TiO2 Phosphopeptide enriched, Steps1-2 Keck JM, et al. (2011)
    View Run MLP2 #34 Asynchronous SPB prep Keck JM, et al. (2011)
    View Run MLP2 #04 Alpha Factor Prep2 Keck JM, et al. (2011)
    View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)
    View Run MLP2 #06 Alpha Factor Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #19b Asynchronous Prep1-new search criteria Keck JM, et al. (2011)
    View Run MLP2 #19a Asynchronous Prep1-new search criteria Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data BMS1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] MSA 2.253997 View MSA. No confident structure predictions are available.
    2 View Details [175..329] deduced N/A No confident structure predictions are available.
    3 View Details [330..693] PSI-BLAST 2.221849 Heavy meromyosin subfragment
    4 View Details [694..982] MSA 2.429937 View MSA. No confident structure predictions are available.
    5 View Details [983..1096] MSA 1.027985 View MSA. No confident structure predictions are available.
    6 View Details [1097..1183] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.43368780168847 bayes_pls_golite062009
  • motor activity
    		•  1.66001460462062 bayes_pls_golite062009
  • RNA binding
    		•  1.64085862208961 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.58614825683861 bayes_pls_golite062009
  • microtubule motor activity
    		•  1.51492936494661 bayes_pls_golite062009
    		• 1.40793830270505 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.38653949159874 bayes_pls_golite062009
  • RNA helicase activity
    		•  1.19425264627559 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  1.16223608981327 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  1.13639104386803 bayes_pls_golite062009
  • DNA binding
    		•  1.10928092522596 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.02050154675732 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.01452238670999 bayes_pls_golite062009
  • catalytic activity
    		•  0.942640875796745 bayes_pls_golite062009
  • structural molecule activity
    		•  0.675553718290749 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.661839640945953 bayes_pls_golite062009
  • hydrolase activity
    		•  0.59573424609875 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.561205936947495 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.561205936947495 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.560259345938113 bayes_pls_golite062009
  • tubulin binding
    		•  0.486290099514671 bayes_pls_golite062009
  • protein binding
    		•  0.409258528033042 bayes_pls_golite062009
  • helicase activity
    		•  0.389068221426991 bayes_pls_golite062009
  • microtubule binding
    		•  0.379674198622762 bayes_pls_golite062009
  • actin binding
    		•  0.332654682400232 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.191068703418711 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.188196054823553 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.184212465168396 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.147137984163853 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0836981407579493 bayes_pls_golite062009
  • microfilament motor activity
    		•  0.0684601046679916 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.0655945570748848 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.0655945570748848 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle