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Protein Overview: UTP10

General Information:
Name(s) found: UTP10 / YJL109C [SGD]
Description(s) found:
Found 26 descriptions.
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  • Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 1769 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed articleLink to PubMed article]
    small nucleolar ribonucleoprotein complex [IPILink to PubMed article]
    Biological Process: maturation of SSU-rRNA [IMPLink to PubMed article][IPILink to PubMed article]
    ribosome biogenesis [RCALink to PubMed article]
    Molecular Function: snoRNA binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSDQLAQ VASNNATVAL DRKRRQKLHS ASLIYNSKTA ATQDYDFIFE NASKALEELS  60
   61 QIEPKFAIFS RTLFSESSIS LDRNVQTKEE IKDLDNAINA YLLLASSKWY LAPTLHATEW 120
  121 LVRRFQIHVK NTEMLLLSTL NYYQTPVFKR ILSIIKLPPL FNCLSNFVRS EKPPTALTMI 180
  181 KLFNDMDFLK LYTSYLDQCI KHNATYTNQL LFTTCCFINV VAFNSNNDEK LNQLVPILLE 240
  241 ISAKLLASKS KDCQIAAHTI LVVFATALPL KKTIILAAME TILSNLDAKE AKHSALLTIC 300
  301 KLFQTLKGQG NVDQLPSKIF KLFDSKFDTV SILTFLDKED KPVCDKFITS YTRSIARYDR 360
  361 SKLNIILSLL KKIRLERYEV RLIITDLIYL SEILEDKSQL VELFEYFISI NEDLVLKCLK 420
  421 SLGLTGELFE IRLTTSLFTN ADVNTDIVKQ LSDPVETTKK DTASFQTFLD KHSELINTTN 480
  481 VSMLTETGER YKKVLSLFTE AIGKGYKASS FLTSFFTTLE SRITFLLRVT ISPAAPTALK 540
  541 LISLNNIAKY INSIEKEVNI FTLVPCLICA LRDASIKVRT GVKKILSLIA KRPSTKHYFL 600
  601 SDKLYGENVT IPMLNPKDSE AWLSGFLNEY VTENYDISRI LTPKRNEKVF LMFWANQALL 660
  661 IPSPYAKTVL LDNLNKSPTY ASSYSSLFEE FISHYLENRS SWEKSCIANK TNFEHFERSL 720
  721 VNLVSPKEKQ SFMIDFVLSA LNSDYEQLAN IAAERLISIF ASLNNAQKLK IVQNIVDSSS 780
  781 NVESSYDTVG VLQSLPLDSD IFVSILNQNS ISNEMDQTDF SKRRRRRSST SKNAFLKEEV 840
  841 SQLAELHLRK LTIILEALDK VRNVGSEKLL FTLLSLLSDL ETLDQDGGLP VLYAQETLIS 900
  901 CTLNTITYLK EHGCTELTNV RADILVSAIR NSASPQVQNK LLLVIGSLAT LSSEVILHSV 960
  961 MPIFTFMGAH SIRQDDEFTT KVVERTILTV VPALIKNSKG NEKEEMEFLL LSFTTALQHV1020
 1021 PRHRRVKLFS TLIKTLDPVK ALGSFLFLIA QQYSSALVNF KIGEARILIE FIKALLVDLH1080
 1081 VNEELSGLND LLDIIKLLTS SKSSSEKKKS LESRVLFSNG VLNFSESEFL TFMNNTFEFI1140
 1141 NKITEETDQD YYDVRRNLRL KVYSVLLDET SDKKLIRNIR EEFGTLLEGV LFFINSVELT1200
 1201 FSCITSQENE EASDSETSLS DHTTEIKEIL FKVLGNVLQI LPVDEFVNAV LPLLSTSTNE1260
 1261 DIRYHLTLVI GSKFELEGSE AIPIVNNVMK VLLDRMPLES KSVVISQVIL NTMTALVSKY1320
 1321 GKKLEGSILT QALTLATEKV SSDMTEVKIS SLALITNCVQ VLGVKSIAFY PKIVPPSIKL1380
 1381 FDASLADSSN PLKEQLQVAI LLLFAGLIKR IPSFLMSNIL DVLHVIYFSR EVDSSIRLSV1440
 1441 ISLIIENIDL KEVLKVLFRI WSTEIATSND TVAVSLFLST LESTVENIDK KSATSQSPIF1500
 1501 FKLLLSLFEF RSISSFDNNT ISRIEASVHE ISNSYVLKMN DKVFRPLFVI LVRWAFDGEG1560
 1561 VTNAGITETE RLLAFFKFFN KLQENLRGII TSYFTYLLEP VDMLLKRFIS KDMENVNLRR1620
 1621 LVINSLTSSL KFDRDEYWKS TSRFELISVS LVNQLSNIEN SIGKYLVKAI GALASNNSGV1680
 1681 DEHNQILNKL IVEHMKASCS SNEKLWAIRA MKLIYSKIGE SWLVLLPQLV PVIAELLEDD1740
 1741 DEEIEREVRT GLVKVVENVL GEPFDRYLD

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) BMS1 BRX1 CBF5 CIC1 DIM1 DIP2 ECM16 EMG1 ENP1 ENP2 ERB1 HAS1 IMP3 KRE33 MPP10 NAN1 NOC2 NOC4 NOP1 NOP12 NOP14 NOP56 PNO1 POL5 PWP2 ROK1 RPS13 RPS7A RRP12 RRP9 SOF1 URB1 UTP10 UTP13 UTP15 UTP18 UTP20 UTP21 UTP22 UTP30 UTP4 UTP5 UTP6 UTP7 UTP8 UTP9
    View Details (MIPS) Mewes HW, et al. (2004) DRS1 GAR1 IFH1 NOP1 NPL3 NSR1 POP1 POP2 RAT1 RNT1 RRP3 SBP1 SNM1 SRD1 UTP10 UTP11 UTP13 UTP4 UTP5 UTP6 UTP7 UTP8 UTP9 YME2
    View Details Krogan NJ, et al. (2006) GFD2 NAN1 POL5 UTP10 UTP15 UTP4 UTP5 UTP8 UTP9
    View Details Gavin AC, et al. (2006) CMS1 DIP2 MRD1 NAN1 NOP58 PNO1 PWP2 ROK1 RRP9 UTP10 UTP13 UTP15 UTP18 UTP21 UTP22 UTP4 UTP6 UTP7 UTP8 UTP9
    View Details Gavin AC, et al. (2002) AAR2 ADE4 ARX1 ASC1 BEM2 BFR2 BMS1 BRX1 BUD20 BUD21 CBF5 CFT2 CIC1 CKA1 CKA2 CKB1 CKB2 CLU1 CMD1 CMS1 CSL4 CTR9 CYR1 CYS4 DBP10 DBP8 DBP9 DCP2 DIA4 DIM1 DIP2 DIS3 DRS1 EBP2 ECM16 ECM29 EMG1 ENP1 ENP2 ERB1 ERO1 ESF1 ESF2 FAP7 FIP1 FPR4 FUN12 GAR1 GCN1 GLC7 HAS1 HCA4 HDA1 HER1 HHF1, HHF2 HIS3 HSL1 HTA2 IMP3 IMP4 INP2 IPI1 IPI3 KRE33 KRR1 LCP5 LHP1 LOC1 LRP1 LSG1 LTV1 MAK21 MAK5 MAM33 MDN1 MIS1 MLC1 MPP10 MRD1 MRP7 MRT4 MTR3 MVD1 MYO2 NAN1 NAP1 NHP2 NIP1 NIP7 NMD3 NMD5 NOB1 NOC2 NOC3 NOC4 NOG1 NOG2 NOP1 NOP12 NOP14 NOP15 NOP16 NOP2 NOP4 NOP56 NOP58 NOP6 NOP7 NSA1 NSA2 NUG1 PAP1 PFS2 PNO1 POL2 PRE6 PRE9 PRP4 PRP43 PRT1 PTA1 PTI1 PUF6 PWP2 RCL1 REF2 REI1 RIX1 RIX7 RLP24 RLP7 RML2 RNA14 ROK1 RPA135 RPA190 RPF1 RPF2 RPG1 RPP2B RPT6 RRP1 RRP12 RRP4 RRP40 RRP42 RRP43 RRP45 RRP46 RRP6 RRP7 RRP9 RSA3 RSA4 RTG2 RTR1 SAM1 SCL1 SDA1 SEC21 SEC7 SHE4 SKI2 SKI3 SKI6 SKI7 SLX9 SMB1 SNU114 SNU13 SNU66 SOF1 SPB1 SPB4 SRO9 SRP1 SSF1 TIF1, TIF2 TIF4631 TIF4632 TIF6 TSR1 TUB3 URB1 UTP10 UTP11 UTP13 UTP15 UTP18 UTP20 UTP21 UTP22 UTP30 UTP4 UTP6 UTP7 UTP8 UTP9 YGL036W YIR035C YMR310C YOR059C YSH1 YTM1
    View Details Ho Y, et al. (2002) BMS1 BRX1 BUD3 CBF5 CBP2 CCM1 CCT2 CCT3 CCT6 CDC33 CDC53 CIC1 CIN8 CKA1 CKA2 CKB1 CKB2 CLU1 COF1 CTF4 DBP10 DBP7 DED81 DIA2 DIP2 DUG2 ENP1 ENP2 ERB1 ESL2 EST1 FPR3 GBP2 GND1 GPH1 HAS1 HIR1 HMO1 HSH49 HSP104 HTB1 HTB2 ILS1 IMD1 IMD3 ISA1 KGD1 KRE33 KRI1 LCP5 LST4 MCM2 MCM3 MCM5 MGM101 MNP1 MRM1 MSS116 NAN1 NIP7 NMD3 NOC2 NOP1 NOP12 NOP56 NOP6 NPL3 PDI1 PET127 PFK1 PNO1 POL5 PRP40 PRP43 PTC5 PUF6 PWP1 PWP2 RLI1 ROK1 RPF2 RRP1 RRP12 RRP5 RVB1 SCS2 SEH1 SKP1 SLT2 SPB1 SSD1 SSF1 SSF2 SSZ1 TFP1 TIF4631 TIF6 TMA19 TPS2 TRA1 TSR1 URB1 URB2 UTP10 UTP11 UTP13 UTP14 UTP15 UTP18 UTP20 UTP21 UTP22 UTP30 UTP6 UTP7 UTP9 YAK1 YBL104C YER077C YPP1 YRA1 YTM1
    View Details Qiu et al. (2008) BUD21 DBP3 DBP7 DIP2 DRS1 ENP1 GAR1 HCA4 MAK5 NAN1 NOP13 NSR1 NUG1 PWP2 PXR1 RNT1 RRP5 RRP9 SOF1 SPB4 UTP10 UTP11 UTP13 UTP15 UTP20 UTP22 UTP4 UTP5 UTP6 UTP8 UTP9

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run KIP3 No Comments Cheeseman IM, et al. (2002)
    View Run ESF1 No Comments Hazbun TR, et al. (2003)
    View Run ASF1 sample 3121 run on DecaLCQ: searched for phosphorylation Green EM, et al (2005)
    View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
    View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run None Entered #17 Mitotic Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data UTP10 and SPC42 Unpublished Data
    View Data UTP10 and NOP56 Huh WK, et al. (2003)
    View Data UTP10 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..186] Pcons 2.7 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    2 View Details [187..253] Pcons 2.7 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    3 View Details [254..401] Pcons 2.7 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    4 View Details [402..606] Pcons 2.7 Constant regulatory domain of protein phosphatase 2a, pr65alpha
    5 View Details [607..663] deduced N/A No confident structure predictions are available.
    6 View Details [664..818] MSA 1.005996 View MSA. No confident structure predictions are available.
    7 View Details [819..1769] MSA 2.009001 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • RNA binding
    		•  3.36069436734718 bayes_pls_golite062009
  • binding
    		•  2.96084803796407 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69616509670156 bayes_pls_golite062009
  • protein binding
    		•  2.66176697577398 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.19067997822967 bayes_pls_golite062009
  • DNA binding
    		•  1.96172460362671 bayes_pls_golite062009
  • structural molecule activity
    		•  1.49650156618775 bayes_pls_golite062009
  • transcription activator activity
    		•  1.47146260606784 bayes_pls_golite062009
  • mRNA binding
    		•  1.35186555044783 bayes_pls_golite062009
  • transcription factor activity
    		•  1.21493607378314 bayes_pls_golite062009
  • transcription factor binding
    		•  8.79739237675814E-4 bayes_pls_golite062009
    6 No functions predicted.
    7 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle