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Protein Overview: YTM1

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Riffle et al. (2010) (Unpublished Data) BRX1 CIC1 DBP10 DBP9 DRS1 EBP2 ERB1 HAS1 LOC1 MAK21 MAK5 MRT4 NIP7 NOC2 NOC3 NOG1 NOP1 NOP12 NOP15 NOP2 NOP4 NOP7 NSA1 NSA2 NUG1 PUF6 RIX1 RIX7 RLP7 RPF1 RPL25 RRP1 RRP12 SDA1 SPB1 SPB4 TIF6 URB1 YTM1
View Details (MIPS) Mewes HW, et al. (2004) ASE1 ATG4 ATG8 BIK1 BIM1 CBF5 CIN2 CIN4 MHP1 RBL2 SPC98 STU1 STU2 YTM1
View Details Krogan NJ, et al. (2006) MSS1 NOP7 NTE1 PDS5 SOP4 STP3 YGR067C YTM1
View Details Gavin AC, et al. (2006) BRX1 CIC1 DBP9 MAK21 MAK5 NOC2 NOP4 RLP7 RSA3 SPB4 YTM1
View Details Gavin AC, et al. (2002) AAR2 ARX1 BEM2 BMS1 BRX1 BUD20 CBF5 CIC1 CLU1 CYR1 CYS4 DBP10 DBP9 DCP2 DRS1 EBP2 ERB1 FPR4 FUN12 GAR1 GCN1 HAS1 HDA1 HER1 HIS3 INP2 IPI1 IPI3 KRE33 KRR1 LHP1 LOC1 LSG1 MAK21 MAK5 MDN1 MIS1 MRP7 MRT4 NAP1 NHP2 NIP1 NIP7 NMD3 NOC2 NOC3 NOG1 NOG2 NOP1 NOP12 NOP15 NOP16 NOP2 NOP4 NOP56 NOP6 NOP7 NSA1 NSA2 NUG1 POL2 PRP4 PRT1 PUF6 REI1 RIX1 RIX7 RLP24 RLP7 RPA135 RPA190 RPF1 RPF2 RPG1 RPP2B RPT6 RRP1 RRP12 RSA3 RSA4 RTR1 SDA1 SEC7 SKI2 SMB1 SNU114 SNU13 SNU66 SPB1 SPB4 SRO9 SSF1 TIF4631 TIF4632 TIF6 TUB3 URB1 UTP10 UTP20 UTP21 UTP22 YGL036W YMR310C YTM1
View Details Ho Y, et al. (2002) AAC3 ACO1 ARP4 ASA1 ATG17 ATG29 ATP3 BFA1 CBF5 CBP2 CCM1 CCT6 CDC14 CDC15 CDC33 CFT1 CIC1 CIS1 CKA2 CKB2 CLU1 CYS4 DBP10 DBP7 DNL4 DUG2 EBP2 EGD2 ELA1 ENP2 ERB1 FAA4 FIN1 FIP1 FOL2 FPR3 FPR4 GBP2 GDE1 GLC7 GLC8 GND1 GPH1 GRH1 GUS1 HAP2 HAP5 HAS1 HER1 HMO1 HTA1 HTB2 HXT7 IMD1 IMD3 IMD4 IPP1 ISA1 KEL1 KGD1 KRE33 KRI1 LOC1 MAK16 MAM33 MET6 MGM101 MHP1 MRT4 MSS116 MTQ1 MUB1 NAP1 NMD5 NOC2 NOC3 NOG1 NOP1 NOP12 NOP15 NOP16 NOP2 NOP6 NOP7 NPL3 NSA1 NSA2 NUG1 NUP53 PET127 POL5 PRP43 PSE1 PUF6 PWP1 REG1 RHR2 RLI1 RNR1 RNR2 RPF1 RPF2 RRP1 RRP12 RRP15 RRP17 RRP5 RRT6 SAH1 SAP190 SCD5 SCS2 SDS22 SEC53 SEN1 SPB1 SPB4 SPE3 SRP1 SRP54 SSD1 SSK2 SSQ1 SUI2 SUI3 TEM1 TIF1, TIF2 TIF4631 TIF6 TIS11 TMA108 TRA1 TSR1 UBR2 URB1 URB2 UTP10 UTP20 VPS35 YBR242W YER077C YPD1 YPP1 YRA1 YRA2 YTM1

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)
View Run MLP2 #28 Asynchronous Prep5-TiO2 Phosphopeptide Enrichment Keck JM, et al. (2011)
View Run MLP2 #05 Alpha Factor Prep2-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #07 Alpha Factor Prep3-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data YTM1 Huh WK, et al. (2003)
View Data YTM1 and NOP56 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..404] PSI-BLAST 93.06601 beta1-subunit of the signal-transducing G protein heterotrimer
2 View Details [405..460] PSI-BLAST 150.0 Tup1, C-terminal domain
3 View Details [397..460] PSI-BLAST 28.522879 No description for 2pm6B was found.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • snoRNA binding
  • 3.51833501249106 bayes_pls_golite062009
  • 3.41022148055944 bayes_pls_golite062009
  • RNA binding
  • 3.0829625416797 bayes_pls_golite062009
  • binding
  • 2.42570478946173 bayes_pls_golite062009
  • histone methyltransferase activity (H3-K4 specific)
  • 2.299832037975 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 2.20122168933317 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
  • 1.95039718468175 bayes_pls_golite062009
  • actin binding
  • 1.40054662654509 bayes_pls_golite062009
  • transcription regulator activity
  • 1.25687092973217 bayes_pls_golite062009
  • protein binding
  • 1.21879977456466 bayes_pls_golite062009
  • nucleic acid binding
  • 1.20712373307552 bayes_pls_golite062009
  • structural molecule activity
  • 1.20572493724069 bayes_pls_golite062009
  • tubulin binding
  • 1.10875870970504 bayes_pls_golite062009
  • microtubule binding
  • 1.03769395387791 bayes_pls_golite062009
  • DNA binding
  • 0.711274653406079 bayes_pls_golite062009
  • ligase activity
  • 0.280267687917718 bayes_pls_golite062009
  • transcription factor activity
  • 0.243992994917491 bayes_pls_golite062009
  • dynein binding
  • 0.180120691665679 bayes_pls_golite062009
  • histone binding
  • 0.166694897714113 bayes_pls_golite062009
  • chromatin binding
  • 0.145491963066342 bayes_pls_golite062009
  • mRNA binding
  • 0.0519838181830878 bayes_pls_golite062009
    3 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle