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Protein Overview: UTP6

General Information:
Name(s) found: UTP6 / YDR449C [SGD]
Description(s) found:
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  • gi|927708|gb|AAB64874.1| Ydr449cp; CAI: 0.18 [Saccharomyces cerevisiae] [NCBI NR]
  • gi|6320657|ref|NP_010737.1| Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; Utp6p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|3915978|sp|Q02354.2|UTP6_YEAST RecName: Full=U3 small nucleolar RNA-associated protein 6; Short=U3 snoRNA-associated protein 6; AltName: Full=U three protein 6 [NCBI NR]
  • pir||S69728 hypothetical protein YDR449c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • (Q02354) Hypothetical 52.4 kDa protein in ADA2-RPS18A intergenic region [Swiss-Prot]
  • U3 small nucleolar RNA-associated protein 6 OS=Saccharomyces cerevisiae GN=UTP6 PE=1 SV=2 [Swiss-Prot]
  • UTP6 U3 snoRNP protein [mips]
  • Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA [SGD]
  • YDR449C, Chr IV from 1357569-1358891, reverse complement [yeast_orfs2]
  • Chr IV from 1357569-1358891, reverse complement [yeastorf3.fasta]
  • Chr IV from 1357568-1358890, reverse complement [yeastorf4.fasta]
  • Chr IV from 1358890-1357568, reverse complement [yeastorf5.fasta]
  • UTP6 SGDID:S0002857, Chr IV from 1358890-1357568, reverse complement, Verified ORF [yeastflysequest.fasta]
  • UTP6 SGDID:S0002857, Chr IV from 1358892-1357570, reverse complement, Verified ORF [10112005cervSGD.fasta]
  • Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA [Saccharomyces cerevisiae]gi|2131499|pir||S69728 hypothetical protein YDR449c - yeast (Saccharomyces cerevisiae)gi [nrdb_11152004_Chlamydomonas]
  • UTP6 SGDID:S000002857, Chr IV from 1358892-1357570, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • UTP6 SGDID:S000002857, Chr IV from 1358894-1357572, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA" [yeast-contam.fasta]
  • UTP6 SGDID:S000002857, Chr IV from 1358895-1357573, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • Ydr449cp; CAI: 0.18 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA; Utp6p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • U3 small nucleolar RNA-associated protein 6 (U3 snoRNA-associated protein 6) [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • U3 small nucleolar RNA-associated protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP6 PE=1 SV=2 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • UTP6 SGDID:S000002857, Chr IV from 1358902-1357580, Genome Release 64-1-1, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA" [yeast-030211-contam.fasta]
  • UTP6 SGDID:S000002857, Chr IV from 1358902-1357580, Genome Release 64-2-1, reverse complement, Verified ORF, "Nucleolar protein; component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA" [20141208_orf_trans.fasta]
  • YDR449C SGDID:S000002857, Chr IV from 1358902-1357580, Genome Release 64-1-1, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 440 amino acids

    Gene Ontology:
    Cellular Component: small nucleolar ribonucleoprotein complex [IPILink to PubMed article]
    Biological Process: maturation of SSU-rRNA [IMPLink to PubMed article][IPILink to PubMed article]
    ribosome biogenesis [RCALink to PubMed article]
    Molecular Function: snoRNA binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTRYYLEQ CIPEMDDLVE KGLFTKNEVS LIMKKRTDFE HRLNSRGSSI NDYIKYINYE  60
   61 SNVNKLRAKR CKRILQVKKT NSLSDWSIQQ RIGFIYQRGT NKFPQDLKFW AMYLNYMKAR 120
  121 GNQTSYKKIH NIYNQLLKLH PTNVDIWISC AKYEYEVHAN FKSCRNIFQN GLRFNPDVPK 180
  181 LWYEYVKFEL NFITKLINRR KVMGLINERE QELDMQNEQK NNQAPDEEKS HLQVPSTGDS 240
  241 MKDKLNELPE ADISVLGNAE TNPALRGDIA LTIFDVCMKT LGKHYINKHK GYYAISDSKM 300
  301 NIELNKETLN YLFSESLRYI KLFDEFLDLE RDYLINHVLQ FWKNDMYDLS LRKDLPELYL 360
  361 KTVMIDITLN IRYMPVEKLD IDQLQLSVKK YFAYISKLDS ASVKSLKNEY RSYLQDNYLK 420
  421 KMNAEDDPRY KILDLIISKL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) BFR2 BMS1 DIM1 DIP2 ECM16 EMG1 ENP1 ENP2 IMP3 IMP4 KRE33 KRR1 MPP10 NAN1 NOC4 NOP1 NOP14 NOP56 PNO1 PWP2 ROK1 RPS13 RPS7A RRP9 SOF1 UTP10 UTP13 UTP15 UTP18 UTP20 UTP21 UTP22 UTP30 UTP4 UTP6 UTP7 UTP8
    View Details (MIPS) Mewes HW, et al. (2004) DRS1 GAR1 IFH1 NOP1 NPL3 NSR1 POP1 POP2 RAT1 RNT1 RRP3 SBP1 SNM1 SRD1 UTP10 UTP11 UTP13 UTP4 UTP5 UTP6 UTP7 UTP8 UTP9 YME2
    View Details Krogan NJ, et al. (2006) DIP2 HSV2 PWP2 UTP13 UTP18 UTP21 UTP6 YJL147C
    View Details Gavin AC, et al. (2006) CMS1 DIP2 ENP1 ENP2 KRE33 KRR1 MRD1 NAN1 NOC4 NOP14 NOP58 PNO1 PWP2 ROK1 RRP9 UTP10 UTP13 UTP15 UTP18 UTP21 UTP22 UTP4 UTP6 UTP7 UTP8 UTP9
    View Details Gavin AC, et al. (2002) ADE4 ADH1 ASC1 ATG9 BEM2 BFR2 BMS1 BRX1 BUD21 CBF5 CFT2 CKA1 CKA2 CKB1 CKB2 CLU1 CMS1 DBP8 DIA4 DIM1 DIP2 DIS3 ECM16 ECM29 EMG1 ENP1 ENP2 ERO1 ESF1 ESF2 FAP7 FIP1 FUN12 GCN1 GLC7 GLT1 HAS1 HCA4 HCR1 HHF1, HHF2 HRR25 HSL1 HTA2 IMP3 IMP4 IST2 KRE33 KRR1 KTR5 LCP5 LSG1 LTV1 MPP10 MRD1 MVD1 NAN1 NIP1 NOB1 NOC2 NOC4 NOG1 NOP1 NOP12 NOP14 NOP56 NOP58 NOP6 NOP7 PAP1 PFS2 PNO1 PRE6 PRE9 PRP43 PRT1 PTA1 PTI1 PWP2 RCL1 REF2 RIC1 RIO2 RLI1 RML2 RNA14 ROK1 RPG1 RPP2B RRP12 RRP7 RRP9 RTG2 SAM1 SCL1 SEC21 SLX9 SNF2 SNF5 SOF1 SPT5 SRO9 SUA7 SUI1 SUI2 SUI3 SUP45 SWI3 TIF1, TIF2 TIF34 TIF35 TIF5 TSR1 UTP10 UTP11 UTP13 UTP15 UTP18 UTP20 UTP21 UTP22 UTP30 UTP4 UTP6 UTP7 UTP8 UTP9 YGL036W YGR054W YOR059C YSH1
    View Details Ho Y, et al. (2002) CKA1 CKA2 CKB1 CKB2 DIP2 ESL2 KRE33 LCP5 NAN1 NOP1 NOP56 PNO1 PRP40 PTC5 PWP2 RRP5 TFP1 UTP10 UTP11 UTP13 UTP14 UTP18 UTP21 UTP22 UTP30 UTP6 YGR210C
    View Details Qiu et al. (2008) BUD21 DBP3 DBP6 DBP7 DBP8 DHR2 DIP2 DRS1 ECM16 ENP1 FAL1 GAR1 HAS1 IMP3 KRI1 MAK5 MLP2 MRD1 MTR4 NAN1 NOP12 NOP4 NOP7 NOP8 NSR1 POP1 PRP43 PUF2 PUF6 PWP2 RKI1 RNT1 RPL20B RPL27B RPS26A RRP1 RRP5 RRP9 SAS10 SBP1 SGD1 SOF1 SPB4 TOS4 TSR1 URB2 UTP10 UTP11 UTP13 UTP14 UTP15 UTP18 UTP20 UTP21 UTP4 UTP5 UTP6 UTP7 UTP8 UTP9

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data UTP6 and SPC42 Unpublished Data
    View Data UTP6 Huh WK, et al. (2003)
    View Data UTP6 and NOP56 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..64] PSI-BLAST 13.0 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    2 View Details [65..124] PSI-BLAST 13.0 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    3 View Details [125..221] PSI-BLAST 13.0 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
    4 View Details [222..289] deduced N/A Confident ab initio structure predictions are available.
    5 View Details [290..440] ab initio 3.54 No description for 1bn6A was found.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle