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Protein Overview: SNF2

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CAB3 No Comments Hazbun TR, et al. (2003)
View Run LST8 No Comments Reinke A, et al. (2004)
View Run TOR2 No Comments Reinke A, et al. (2004)
View Run PAN1 No Comments Toshima J, et al (2006)
View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
View Run RLF2 identification data - first search in cascade Green EM, et al (2005)
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run VAM3 Sample: HX11 - both fusion and trans-SNARE complex formation take place. Hao Xu, et al. (2010)
View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SNF2 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..404] MSA 28.176997 View MSA. No confident structure predictions are available.
2 View Details [405..708] deduced N/A No confident structure predictions are available.
3 View Details [709..962] PSI-BLAST 7.221849 RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain
4 View Details [963..1014] deduced N/A No confident structure predictions are available.
5 View Details [1015..1086] PSI-BLAST 7.39794 Putative DEAD box RNA helicase
6 View Details [1087..1347] PSI-BLAST 5.39794 Nucleotide excision repair enzyme UvrB
7 View Details [1348..1510] deduced N/A No confident structure predictions are available.
8 View Details [1511..1703] PSI-BLAST 87.10721 GCN5

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3 No functions predicted.
4
Term Confidence Notes
  • binding
  • 2.64537357529343 bayes_pls_golite062009
  • nucleic acid binding
  • 2.51683451033161 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
  • 2.4348680404207 bayes_pls_golite062009
  • pyrophosphatase activity
  • 2.13284212711072 bayes_pls_golite062009
  • DNA binding
  • 2.12258000781149 bayes_pls_golite062009
  • transcription regulator activity
  • 2.09345198747025 bayes_pls_golite062009
  • helicase activity
  • 1.70242731830224 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.2539059700735 bayes_pls_golite062009
  • protein binding
  • 1.22129154759482 bayes_pls_golite062009
  • DNA-dependent ATPase activity
  • 1.2155186842031 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
  • 1.19311444180077 bayes_pls_golite062009
  • ATP-dependent helicase activity
  • 1.19311444180077 bayes_pls_golite062009
  • double-stranded DNA binding
  • 1.117585097627 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 1.07968294254548 bayes_pls_golite062009
  • histone acetyltransferase activity
  • 1.05990253628867 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
  • 1.05990253628867 bayes_pls_golite062009
  • catalytic activity
  • 1.00104173493322 bayes_pls_golite062009
  • transcription activator activity
  • 0.889929694023098 bayes_pls_golite062009
  • transcription factor activity
  • 0.887108427603557 bayes_pls_golite062009
  • DNA helicase activity
  • 0.72881469450553 bayes_pls_golite062009
  • motor activity
  • 0.677658554107 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.568457189190858 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.543891899378373 bayes_pls_golite062009
  • mismatched DNA binding
  • 0.31144582840038 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.243902356228423 bayes_pls_golite062009
  • RNA helicase activity
  • 0.18426050934025 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.147579541298736 bayes_pls_golite062009
  • RNA-dependent ATPase activity
  • 0.14606996093053 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
  • 0.13050483816765 bayes_pls_golite062009
  • microtubule motor activity
  • 0.11674780318211 bayes_pls_golite062009
  • nucleotide binding
  • 0.114848452385726 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
  • 0.113504049290503 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
  • 0.111293884322157 bayes_pls_golite062009
  • purine nucleotide binding
  • 0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
  • 0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
  • 0.0915913646217636 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle