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Protein Overview: VAM3

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run VAM3 sample: hx1 Hao Xu, et al. (2010)
View Run VAM3 sample: hx2 Hao Xu, et al. (2010)
View Run VAM3 sample: hx3 Hao Xu, et al. (2010)
View Run VAM3 sample: hx4 Hao Xu, et al. (2010)
View Run VAM3 Sample: HX11 - both fusion and trans-SNARE complex formation take place. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX12 - trans-SNARE complex formation and fusion are inhibited (control). Hao Xu, et al. (2010)
View Run VAM3 Sample: HX13 - trans-SNARE complex forms but fusion is blocked. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX14 - mixture in detergent (control). Hao Xu, et al. (2010)
View Run VAM3 hx21: both fusion and trans-SNARE complex formation take place. Investigating Vam3p, Nyv1p and their partners in trans-SNARE complex Hao Xu, et al. (2010)
View Run VAM3 hx23: mixture in detergent (control) Investigating Vam3p, Nyv1p and their partners in trans-SNARE complex Hao Xu, et al. (2010)
View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen VAM7 VAM3 2 Uetz P, et al. (2000)

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..121] PSI-BLAST 395.30103 Vam3p N-terminal domain
2 View Details [122..185] deduced N/A No confident structure predictions are available.
3 View Details [186..283] ORFEUS 13.98 Syntaxin 7

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • phosphatidic acid binding
  • 4.54790612451186 bayes_pls_golite062009
  • SNAP receptor activity
  • 3.50393203740159 bayes_pls_golite062009
  • binding
  • 2.18404492932496 bayes_pls_golite062009
  • protein binding
  • 1.82422117934251 bayes_pls_golite062009
  • transporter activity
  • 1.74189664015129 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 1.2360389745429 bayes_pls_golite062009
  • transmembrane transporter activity
  • 1.13101548288086 bayes_pls_golite062009
  • protein transporter activity
  • 0.81087535212264 bayes_pls_golite062009
  • SNARE binding
  • 0.71459772253941 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
  • 0.398018181744571 bayes_pls_golite062009
  • ion transmembrane transporter activity
  • 0.0981818568206971 bayes_pls_golite062009
  • phospholipid binding
  • 0.0172309833091902 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 0.00476738027966683 bayes_pls_golite062009
    2
    Term Confidence Notes
  • phosphatidic acid binding
  • 3.99289411123023 bayes_pls_golite062009
  • SNAP receptor activity
  • 2.87584659156593 bayes_pls_golite062009
  • binding
  • 2.10865031355861 bayes_pls_golite062009
  • protein binding
  • 1.71065434412329 bayes_pls_golite062009
  • transporter activity
  • 1.70608335538771 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 1.17569067269837 bayes_pls_golite062009
  • transmembrane transporter activity
  • 1.13402377922348 bayes_pls_golite062009
  • protein transporter activity
  • 0.593122950767464 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
  • 0.396657939634767 bayes_pls_golite062009
  • SNARE binding
  • 0.387098576112631 bayes_pls_golite062009
  • ion transmembrane transporter activity
  • 0.0934422877951697 bayes_pls_golite062009
    3 No functions predicted.




    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle