| Protein: | VAM3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 283 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAM3.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-46 | [34..281] | [1..254] |
|
|
3.0E-45 | [1..281] | [1..282] |
|
|
4.0E-45 | [6..281] | [1..282] |
|
|
1.0E-44 | [6..281] | [1..282] |
|
|
2.0E-44 | [6..281] | [1..282] |
|
|
7.0E-44 | [9..281] | [6..283] |
|
Region A: Residues: [1-121] |
1 11 21 31 41 51
| | | | | |
1 MSFFDIEAQS SKGNSQQEPQ FSTNQKTKEL SNLIETFAEQ SRVLEKECTK IGSKRDSKEL 60
61 RYKIETELIP NCTSVRDKIE SNILIHQNGK LSADFKNLKT KYQSLQQSYN QRKSLFPLKT 120
121 P
|
| Detection Method: |  |
| Confidence: | 395.30103 |
| Match: | 1hs7A_ |
| Description: | Vam3p N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| phosphatidic acid binding | 4.54790612451186 | bayes_pls_golite062009 |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| binding | 2.18404492932496 | bayes_pls_golite062009 |
| protein binding | 1.82422117934251 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.2360389745429 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| protein transporter activity | 0.81087535212264 | bayes_pls_golite062009 |
| SNARE binding | 0.71459772253941 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.398018181744571 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.0981818568206971 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.00476738027966683 | bayes_pls_golite062009 |
|
Region A: Residues: [122-185] |
1 11 21 31 41 51
| | | | | |
1 ISPGTSKERK DIHPRTEAVR QDPESSYISI KVNEQSPLLH NEGQHQLQLQ EEQEQQQQGL 60
61 SQEE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| phosphatidic acid binding | 3.99289411123023 | bayes_pls_golite062009 |
| SNAP receptor activity | 2.87584659156593 | bayes_pls_golite062009 |
| binding | 2.10865031355861 | bayes_pls_golite062009 |
| protein binding | 1.71065434412329 | bayes_pls_golite062009 |
| transporter activity | 1.70608335538771 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.17569067269837 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13402377922348 | bayes_pls_golite062009 |
| protein transporter activity | 0.593122950767464 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.396657939634767 | bayes_pls_golite062009 |
| SNARE binding | 0.387098576112631 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.0934422877951697 | bayes_pls_golite062009 |
|
Region A: Residues: [186-283] |
1 11 21 31 41 51
| | | | | |
1 LDFQTIIHQE RSQQIGRIHT AVQEVNAIFH QLGSLVKEQG EQVTTIDENI SHLHDNMQNA 60
61 NKQLTRADQH QRDRNKCGKV TLIIIIVVCM VVLLAVLS
|
| Detection Method: | |
| Confidence: | 13.98 |
| Match: | 1gl2B |
| Description: | Syntaxin 7 |
Matching Structure (courtesy of the PDB): |
|
