YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAM3
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFDIEAQS SKGNSQQEPQ FSTNQKTKEL SNLIETFAEQ SRVLEKECTK IGSKRDSKEL  60
   61 RYKIETELIP NCTSVRDKIE SNILIHQNGK LSADFKNLKT KYQSLQQSYN QRKSLFPLKT 120
  121 PISPGTSKER KDIHPRTEAV RQDPESSYIS IKVNEQSPLL HNEGQHQLQL QEEQEQQQQG 180
  181 LSQEELDFQT IIHQERSQQI GRIHTAVQEV NAIFHQLGSL VKEQGEQVTT IDENISHLHD 240
  241 NMQNANKQLT RADQHQRDRN KCGKVTLIII IVVCMVVLLA VLS

Type	Start	End	Confidence
Cytoplasmic	1	261	0.89
Transmembrane Helix	262	282	0.90
Non-Cytoplasmic	283	283	0.92