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Protein Overview: SGN1

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SGN1 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..142] PSI-BLAST 86.056057 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
2 View Details [143..250] PSI-BLAST 86.056057 Nuclear ribonucleoprotein A1 (RNP A1, UP1)

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 4.63987691433124 bayes_pls_golite062009
  • mRNA binding
  • 3.54495985180603 bayes_pls_golite062009
  • nucleic acid binding
  • 3.14140374009254 bayes_pls_golite062009
  • binding
  • 2.41127885655304 bayes_pls_golite062009
  • single-stranded RNA binding
  • 1.46469774223879 bayes_pls_golite062009
  • 1.35163561991147 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.544292786424842 bayes_pls_golite062009
  • protein binding
  • 0.42571879933058 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.366474768004238 bayes_pls_golite062009
  • transcription regulator activity
  • 0.0376525951141159 bayes_pls_golite062009
  • DNA binding
  • 0.017779252073686 bayes_pls_golite062009
    2 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle