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Protein Overview: YML002W

General Information:
Name(s) found: YML002W [SGD]
Description(s) found:
Found 20 descriptions.
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  • Putative protein of unknown function; expression induced by heat and by calcium shortage [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 737 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHQLELPD GLNNMTMDAD TLISLFVLVV CRSEQKHLKS HLYYLQNFSN NSSSTKFGIL  60
   61 GYAVSTLEAV VCYFEDFNKN TGNVAKANTL CEKTKNLLDK LSCENPTNEV EDLATYKDIL 120
  121 TYRNEQGQSI LSICITNHKN YILLDILSEY ENDFPVEDLL EDETIDGSTL LIESIKAGNL 180
  181 EAAKVLIKIM LFNCTEEELV SYINKTDKYA RTVAHYLTHE MDILKSIGNY IDWKRKNSSG 240
  241 QTPLFSIFRS YDQPNYEEMV KTAFDIANTW YRKHNSLFDY LDHTDNKGNS LLHVLKTNIP 300
  301 ILLQLTKLDI NEENYKGLTP LMVYVKYKRL SNIDAITKDR RLILEKVQNS TFFTCFDYAK 360
  361 DHSVLSKIGE RGVKDSLFGL IYFHSLRYHN LNATTNITSV SNAEKPFATT VINMKTIQGL 420
  421 LRSILKDNPF TFLPLNTYID EISHLNRSDL TIIGKTDVTS LLHQLTNCFN VLLFLKKIPE 480
  481 NLFTDEASIL YWMRINTSKR NQKPSGKENP KTMEPEEINM IQSFLRFNFD EISSFKASLN 540
  541 ILRKVLIFIN LKSDDFEDAY KGLNEMGRKL INSEASSAFK GIITNHNMFS ELSLAALLEN 600
  601 VRFLEQCTIQ LSSFVQIILF EKIPNWWKHY GEFLALHKSY RKAFPNMVKP KSASDTSSRA 660
  661 PLGGFIETKR EQSEQRLAVQ IKASSKMLKE LGSEIFVAHE RLAEELSNYM EFRKACLDQR 720
  721 SLVAFATTNI SVLQECV

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) ARG3 ATP3 BUD30 CIK1 GAL80 PMI40 SGN1 YGR250C YML002W YOR1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] PSI-BLAST 19.0 p18ink4C(ink6)
    2 View Details [97..166] PSI-BLAST 19.0 p18ink4C(ink6)
    3 View Details [167..282] PSI-BLAST 47.39794 bcl-3
    4 View Details [283..447] PSI-BLAST 47.39794 bcl-3
    5 View Details [448..737] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle