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View Structure Prediction Details

Protein: YML002W
Organism: Saccharomyces cerevisiae
Length: 737 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML002W.

Description E-value Query
Range
Subject
Range
U5072_YEAST - UPF0507 protein YML002W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML002W PE=3 SV=...
YML002W - Putative protein of unknown function; expression induced by heat and by calcium shortage
0.0 [1..737] [1..737]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [6..600] [61..718]
ANK2 - ankyrin 2, neuronal
0.0 [1..533] [112..646]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
0.0 [1..534] [93..620]
gi|3885972 - gi|3885972|gb|AAC78143.1| 270 kDa ankyrin G isoform [Rattus norvegicus]
0.0 [6..600] [61..726]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHQLELPD GLNNMTMDAD TLISLFVLVV CRSEQKHLKS HLYYLQNFSN NSSSTKFGIL  60
   61 GYAVSTLEAV VCYFEDFNKN TGNVAKANTL CEKTKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 1ihbA_
Description: p18ink4C(ink6)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [97-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLDKLSCENP TNEVEDLATY KDILTYRNEQ GQSILSICIT NHKNYILLDI LSEYENDFPV  60
   61 EDLLEDETID 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 1ihbA_
Description: p18ink4C(ink6)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [167-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSTLLIESIK AGNLEAAKVL IKIMLFNCTE EELVSYINKT DKYARTVAHY LTHEMDILKS  60
   61 IGNYIDWKRK NSSGQTPLFS IFRSYDQPNY EEMVKTAFDI ANTWYRKHNS LFDYLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.39794
Match: 1k1aA_
Description: bcl-3
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [283-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTDNKGNSLL HVLKTNIPIL LQLTKLDINE ENYKGLTPLM VYVKYKRLSN IDAITKDRRL  60
   61 ILEKVQNSTF FTCFDYAKDH SVLSKIGERG VKDSLFGLIY FHSLRYHNLN ATTNITSVSN 120
  121 AEKPFATTVI NMKTIQGLLR SILKDNPFTF LPLNTYIDEI SHLNR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.39794
Match: 1k1aA_
Description: bcl-3
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [448-737]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDLTIIGKTD VTSLLHQLTN CFNVLLFLKK IPENLFTDEA SILYWMRINT SKRNQKPSGK  60
   61 ENPKTMEPEE INMIQSFLRF NFDEISSFKA SLNILRKVLI FINLKSDDFE DAYKGLNEMG 120
  121 RKLINSEASS AFKGIITNHN MFSELSLAAL LENVRFLEQC TIQLSSFVQI ILFEKIPNWW 180
  181 KHYGEFLALH KSYRKAFPNM VKPKSASDTS SRAPLGGFIE TKREQSEQRL AVQIKASSKM 240
  241 LKELGSEIFV AHERLAEELS NYMEFRKACL DQRSLVAFAT TNISVLQECV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle