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Protein Overview: SNF6

General Information:
Name(s) found: SNF6 / YHL025W [SGD]
Description(s) found:
Found 31 descriptions.
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  • Subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf5p [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 332 amino acids

    Gene Ontology:
    Cellular Component: SWI/SNF complex [TASLink to PubMed article]
    chromatin remodeling complex [TASLink to PubMed article]
    Biological Process: chromatin remodeling [TASLink to PubMed article]
    Molecular Function: general RNA polymerase II transcription factor activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVIKKKRSH HGKASRQQYY SGVQVGGVGS MGAINNNIPS LTSFAEENNY QYGYSGSSAG  60
   61 MNGRSLTYAQ QQLNKQRQDF ERVRLRPEQL SNIIHDESDT ISFRSNLLKN FISSNDAFNM 120
  121 LSLTTVPCDR IEKSRLFSEK TIRYLMQKQH EMKTQAAELQ EKPLTPLKYT KLIAAAEDGS 180
  181 RSTKDMIDAV FEQDSHLRYQ PDGVVVHRDD PALVGKLRGD LREAPADYWT HAYRDVLAQY 240
  241 HEAKERIRQK EVTAGEAQDE ASLQQQQQQD LQQQQQVVTT VASQSPHATA TEKEPVPAVV 300
  301 DDPLENMFGD YSNEPFNTNF DDEFGDLDAV FF

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) ARP7 ARP9 SNF11 SNF12 SNF2 SNF5 SNF6 SWI1 SWI3 SWP82
    View Details (MIPS) Mewes HW, et al. (2004) ARP7 ARP9 SNF11 SNF12 SNF2 SNF5 SNF6 SWI1 SWI3 TAF14
    View Details Krogan NJ, et al. (2006) SNF12 SNF2 SNF5 SNF6 SWI1 SWI3 SWP82
    View Details Gavin AC, et al. (2006) ARP9 SNF11 SNF12 SNF5 SNF6 SWI1 SWI3
    View Details Gavin AC, et al. (2002) ARP9 BEM2 DIM1 ENP1 HRR25 LTV1 NOB1 PNO1 RIO2 RRP12 SNF12 SNF2 SNF5 SNF6 SWI1 SWI3 SWP82 TSR1 VPS1 YGR054W
    View Details Qiu et al. (2008) ARP7 ARP9 SNF11 SNF12 SNF2 SNF5 SNF6 SWI1 SWI3 SWP82 TAF14

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen MDM30 SNF6 2 Unpublished Fields Lab Data
    View Screen ROM2 SNF6 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data SNF6 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..332] deduced N/A No confident structure predictions are available.
    2 View Details [63..332] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.37238916518238 bayes_pls_golite062009
  • protein binding
    		•  2.11359078188979 bayes_pls_golite062009
  • catalytic activity
    		•  0.342991862156338 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle