YRC Public Data Repository - Protein Structure Prediction

Protein:	SNF6
Organism:	Saccharomyces cerevisiae
Length:	332 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF6.

Description	E-value	Query Range	Subject Range
SNF6 - Subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; function... gi\|151944175 - gi\|151944175\|gb\|EDN62467.1\| chromatin remodeling Snf/Swi complex subunit [Saccharomyces cerevisiae Y... SNF6_YEAST - Transcription regulatory protein SNF6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SN...	0.0	[1..332]	[1..332]

Back

Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVIKKKRSH HGKASRQQYY SGVQVGGVGS MGAINNNIPS LTSFAEENNY QYGYSGSSAG  60
   61 MNGRSLTYAQ QQLNKQRQDF ERVRLRPEQL SNIIHDESDT ISFRSNLLKN FISSNDAFNM 120
  121 LSLTTVPCDR IEKSRLFSEK TIRYLMQKQH EMKTQAAELQ EKPLTPLKYT KLIAAAEDGS 180
  181 RSTKDMIDAV FEQDSHLRYQ PDGVVVHRDD PALVGKLRGD LREAPADYWT HAYRDVLAQY 240
  241 HEAKERIRQK EVTAGEAQDE ASLQQQQQQD LQQQQQVVTT VASQSPHATA TEKEPVPAVV 300
  301 DDPLENMFGD YSNEPFNTNF DDEFGDLDAV FF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	2.37238916518238	bayes_pls_golite062009
protein binding	2.11359078188979	bayes_pls_golite062009
catalytic activity	0.342991862156338	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [63-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRSLTYAQQQ LNKQRQDFER VRLRPEQLSN IIHDESDTIS FRSNLLKNFI SSNDAFNMLS  60
   61 LTTVPCDRIE KSRLFSEKTI RYLMQKQHEM KTQAAELQEK PLTPLKYTKL IAAAEDGSRS 120
  121 TKDMIDAVFE QDSHLRYQPD GVVVHRDDPA LVGKLRGDLR EAPADYWTHA YRDVLAQYHE 180
  181 AKERIRQKEV TAGEAQDEAS LQQQQQQDLQ QQQQVVTTVA SQSPHATATE KEPVPAVVDD 240
  241 PLENMFGDYS NEPFNTNFDD EFGDLDAVFF