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Protein Overview: DBP7

General Information:
Name(s) found: DBP7 / YKR024C [SGD]
Description(s) found:
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  • gi|6322876|ref|NP_012949.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; Dbp7p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|549597|sp|P36120.1|DBP7_YEAST RecName: Full=ATP-dependent RNA helicase DBP7; AltName: Full=DEAD box protein 7 [NCBI NR]
  • pir||S38093 probable purine nucleotide-binding protein YKR024c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|486449|emb|CAA82096.1| DBP7 [Saccharomyces cerevisiae] [NCBI NR]
  • ATP-dependent RNA helicase DBP7 OS=Saccharomyces cerevisiae GN=DBP7 PE=1 SV=1 [Swiss-Prot]
  • DBP7 RNA helicase required for 60S ribosomal subunit assembly [mips]
  • Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; essential for growth under anaerobic conditions [SGD]
  • DBP7, Chr XI from 484782-487010, reverse complement [yeast_orfs2]
  • Chr XI from 484782-487010, reverse complement [yeastorf3.fasta]
  • Chr XI from 487010-484782, reverse complement [yeastorf5.fasta]
  • (P36120) ATP-dependent RNA helicase DBP7 [4932.FASTACCERV.txt]
  • DBP7 SGDID:S0001732, Chr XI from 487015-484787, reverse complement, Verified ORF [yeastflysequest.fasta]
  • Dbp7p [Saccharomyces cerevisiae]gi|486449|emb|CAA82096.1| DBP7 [Saccharomyces cerevisiae]gi|539330|pir||S38093 probable purine nucleotide-binding protein YKR024c - yeast (Saccharomyces cerevisiae)gi|549597|sp|P36120|DBP7_YEAST ATP-dependent RNA helica [nrdb_11152004_Chlamydomonas]
  • DBP7 SGDID:S000001732, Chr XI from 487015-484787, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • DBP7 SGDID:S000001732, Chr XI from 487015-484787, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; essential for growth under anaerobic conditions" [yeast-200209-contam.fasta]
  • ATP-dependent RNA helicase DBP7 (DEAD box protein 7) [nr-271106-contam.fasta]
  • DBP7 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; Dbp7p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • ATP-dependent RNA helicase DBP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DBP7 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • DBP7 SGDID:S000001732, Chr XI from 487372-485144, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; essential for growth under anaerobic conditions" [yeast-030211-contam.fasta]
  • DBP7 SGDID:S000001732, Chr XI from 487372-485144, Genome Release 64-2-1, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family; involved in ribosomal biogenesis; required at post-transcriptional step for efficient retrotransposition; essential for growth under anaerobic conditions" [20141208_orf_trans.fasta]
  • YKR024C SGDID:S000001732, Chr XI from 487372-485144, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; essential for growth under anaerobic conditions" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 742 amino acids

    Gene Ontology:
    Cellular Component: nuclear outer membrane [IMPLink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [RCALink to PubMed article]
    ribosomal large subunit assembly [IMPLink to PubMed article]
    Molecular Function: ATP-dependent RNA helicase activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEDSMLLN FTTNEDTAGS SYKQAAKVTG GRWKDRRRMK MKLEGKTVSR KRKANTTGDE  60
   61 GIIPGRGENS IKKLHKESSY SSEEQEKYKG RNAHNTQGRT LPADSQFVSS LFTSNREITT 120
  121 AVNTNIHDEN VAINPSNAPL KGDQFASLGV SSLLVSHLEQ KMRIKKPTSI QKQAIPQIIG 180
  181 NAGKNDFFIH AQTGSGKTLS YLLPIISTIL NMDTHVDRTS GAFALVIAPT RELASQIYHV 240
  241 CSTLVSCCHY LVPCLLIGGE RKKSEKARLR KGCNFIIGTP GRVLDHLQNT KVIKEQLSQS 300
  301 LRYIVLDEGD KLMELGFDET ISEIIKIVHD IPINSEKFPK LPHKLVHMLC SATLTDGVNR 360
  361 LRNVALKDYK LISNGTKKDS DIVTVAPDQL LQRITIVPPK LRLVTLAATL NNITKDFIAS 420
  421 GQQSKTLRTI VFVSCSDSVE FHYDAFSGSD GHHKNLTGDS VRLLTKGNTM FPCFSDSRDP 480
  481 DVVIYKLHGS LSQQMRTSTL QHFARDNEAT KGKHLIMFCT DVASRGLDLP HVGSVIELDP 540
  541 PFAVEDHLHR VGRTARAGEK GESLLFLLPG EEEKYMDYIQ PYHPMGWELL KFDKEILMPA 600
  601 FKDVNVNRND KFIRKDEKSS KNKDVGDKEY EWDTNATTWH LNIERRVVGD SAFKNLAVKG 660
  661 FISHVRAYAT HISQEKKFFN VKFLHLGHLA KSFGLRERPK AMGLQSSKDG NSEKKPTKEN 720
  721 SKNKMFRMAR MAEKQIASEF NY

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) DBP7 PUF6 PWP1
    View Details Krogan NJ, et al. (2006) ALG5 BRE5 CSN12 CUP2 DBP7 LUG1 MET10 MSC7 MSE1 NOP53 NPY1 PBP4 RPF2 RRS1 SAS5 UME6 YGR126W YHR127W YPR045C YRA1
    View Details Ho Y, et al. (2002) ARO1 BCK1 CBF5 CBP2 CCM1 CDC33 CHS1 CIC1 CMP2 DBP7 DRS1 EBP2 ENP2 ERB1 EST1 GBP2 HAS1 HMO1 HSH49 HTB1 HTB2 IMD1 IMD2 IMD3 ISA1 KAP95 KOG1 KRE33 KRI1 KRR1 KSP1 MGM101 MNP1 MRM1 MSS116 NOC2 NOP12 NOP13 NOP2 NOP58 NOP6 NOP7 NPL3 NUG1 PDI1 PET127 POL5 PRI2 PRP43 PSY2 PUF6 PWP1 RLI1 RPF2 RRP1 RRP12 RRP5 TIF1, TIF2 TIF4631 TIF6 TPD3 TRA1 TSR1 URB1 URB2 UTP10 UTP20 YER077C YPP1 YRA1 YTM1
    View Details Qiu et al. (2008) AIR1 BFR2 BRX1 DBP10 DBP3 DBP6 DBP7 DBP8 DHR2 DRS1 ENP1 ERB1 FAL1 GAR1 HAS1 HCA4 IFH1 KRR1 MAK5 MRT4 MTR4 NAN1 NOC3 NOP1 NOP12 NOP13 NOP15 NOP4 NSR1 NUG1 POP1 PRP43 PUF6 PWP2 PXR1 RAT1 RCL1 RNT1 ROK1 RRP1 RRP15 RRP3 RRP8 SGD1 SMB1 SPB4 UTP10 UTP15 UTP18 UTP4 UTP5 UTP6 UTP8 UTP9

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run MLP2 #25 Asynchronous Prep3-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #14 Mitotic Prep2-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data DBP7 Huh WK, et al. (2003)
    View Data DBP7 and NOP56 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] deduced N/A No confident structure predictions are available.
    2 View Details [102..385] PSI-BLAST 237.9897 Putative DEAD box RNA helicase
    3 View Details [386..581] PSI-BLAST 237.9897 Putative DEAD box RNA helicase
    4 View Details [582..742] PSI-BLAST 3.69897 Nucleotide excision repair enzyme UvrB


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle