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View Structure Prediction Details

Protein: DBP7
Organism: Saccharomyces cerevisiae
Length: 742 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DBP7.

Description E-value Query
Range
Subject
Range
DBP7 - Putative ATP-dependent RNA helicase of the DEAD-box family involved in ribosomal biogenesis; essenti...
DBP7_YEAST - ATP-dependent RNA helicase DBP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DBP7 PE=...
0.0 [1..742] [1..742]
DDX3X_MOUSE - ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3
0.0 [14..601] [54..579]
gi|13514813, gi|... - gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens], gi|2580550|gb|AAC51829.1| dead box, X ...
0.0 [14..601] [54..579]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [14..601] [54..579]
DDX3_XENLA - Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3 PE=2 SV=1
0.0 [9..625] [92..644]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
0.0 [9..625] [92..644]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEDSMLLN FTTNEDTAGS SYKQAAKVTG GRWKDRRRMK MKLEGKTVSR KRKANTTGDE  60
   61 GIIPGRGENS IKKLHKESSY SSEEQEKYKG RNAHNTQGRT L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PADSQFVSSL FTSNREITTA VNTNIHDENV AINPSNAPLK GDQFASLGVS SLLVSHLEQK  60
   61 MRIKKPTSIQ KQAIPQIIGN AGKNDFFIHA QTGSGKTLSY LLPIISTILN MDTHVDRTSG 120
  121 AFALVIAPTR ELASQIYHVC STLVSCCHYL VPCLLIGGER KKSEKARLRK GCNFIIGTPG 180
  181 RVLDHLQNTK VIKEQLSQSL RYIVLDEGDK LMELGFDETI SEIIKIVHDI PINSEKFPKL 240
  241 PHKLVHMLCS ATLTDGVNRL RNVALKDYKL ISNGTKKDSD IVTV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 237.9897
Match: 1hv8A_
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [386-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APDQLLQRIT IVPPKLRLVT LAATLNNITK DFIASGQQSK TLRTIVFVSC SDSVEFHYDA  60
   61 FSGSDGHHKN LTGDSVRLLT KGNTMFPCFS DSRDPDVVIY KLHGSLSQQM RTSTLQHFAR 120
  121 DNEATKGKHL IMFCTDVASR GLDLPHVGSV IELDPPFAVE DHLHRVGRTA RAGEKGESLL 180
  181 FLLPGEEEKY MDYIQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 237.9897
Match: 1hv8A_
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [582-742]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YHPMGWELLK FDKEILMPAF KDVNVNRNDK FIRKDEKSSK NKDVGDKEYE WDTNATTWHL  60
   61 NIERRVVGDS AFKNLAVKGF ISHVRAYATH ISQEKKFFNV KFLHLGHLAK SFGLRERPKA 120
  121 MGLQSSKDGN SEKKPTKENS KNKMFRMARM AEKQIASEFN Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1d2mA_
Description: Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle