| Protein: | DBP7 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 742 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DBP7.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..742] | [1..742] |
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0.0 | [14..601] | [54..579] |
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0.0 | [14..601] | [54..579] |
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0.0 | [14..601] | [54..579] |
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0.0 | [9..625] | [92..644] |
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0.0 | [9..625] | [92..644] |
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Region A: Residues: [1-101] |
1 11 21 31 41 51
| | | | | |
1 MSDEDSMLLN FTTNEDTAGS SYKQAAKVTG GRWKDRRRMK MKLEGKTVSR KRKANTTGDE 60
61 GIIPGRGENS IKKLHKESSY SSEEQEKYKG RNAHNTQGRT L
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.360 | d.26.1 | FKBP-like |
| View | Download | 0.351 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.417 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.417 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.360 | d.26.1 | FKBP-like |
| View | Download | 0.351 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.342 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.292 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.292 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.291 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.288 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.282 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.271 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.239 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.234 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.218 | a.35.1 | lambda repressor-like DNA-binding domains |
|
Region A: Residues: [102-385] |
1 11 21 31 41 51
| | | | | |
1 PADSQFVSSL FTSNREITTA VNTNIHDENV AINPSNAPLK GDQFASLGVS SLLVSHLEQK 60
61 MRIKKPTSIQ KQAIPQIIGN AGKNDFFIHA QTGSGKTLSY LLPIISTILN MDTHVDRTSG 120
121 AFALVIAPTR ELASQIYHVC STLVSCCHYL VPCLLIGGER KKSEKARLRK GCNFIIGTPG 180
181 RVLDHLQNTK VIKEQLSQSL RYIVLDEGDK LMELGFDETI SEIIKIVHDI PINSEKFPKL 240
241 PHKLVHMLCS ATLTDGVNRL RNVALKDYKL ISNGTKKDSD IVTV
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| Detection Method: | |
| Confidence: | 237.9897 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [386-581] |
1 11 21 31 41 51
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1 APDQLLQRIT IVPPKLRLVT LAATLNNITK DFIASGQQSK TLRTIVFVSC SDSVEFHYDA 60
61 FSGSDGHHKN LTGDSVRLLT KGNTMFPCFS DSRDPDVVIY KLHGSLSQQM RTSTLQHFAR 120
121 DNEATKGKHL IMFCTDVASR GLDLPHVGSV IELDPPFAVE DHLHRVGRTA RAGEKGESLL 180
181 FLLPGEEEKY MDYIQP
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| Detection Method: | |
| Confidence: | 237.9897 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [582-742] |
1 11 21 31 41 51
| | | | | |
1 YHPMGWELLK FDKEILMPAF KDVNVNRNDK FIRKDEKSSK NKDVGDKEYE WDTNATTWHL 60
61 NIERRVVGDS AFKNLAVKGF ISHVRAYATH ISQEKKFFNV KFLHLGHLAK SFGLRERPKA 120
121 MGLQSSKDGN SEKKPTKENS KNKMFRMARM AEKQIASEFN Y
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| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1d2mA_ |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
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