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Protein Overview: NRD1

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
View Run MLP2 #19 Asynchronous Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #19b Asynchronous Prep1-new search criteria Keck JM, et al. (2011)
View Run MLP2 #19a Asynchronous Prep1-new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen SPT21 NRD1 1 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data NRD1 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..200] MSA 6.475994 View MSA. No confident structure predictions are available.
2 View Details [201..301] PSI-BLAST 52.69897 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
3 View Details [302..413] PSI-BLAST 52.69897 Nuclear ribonucleoprotein A1 (RNP A1, UP1)
4 View Details [414..508] PSI-BLAST 36.69897 Hu antigen D (Hud)
5 View Details [509..575] deduced N/A No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • nucleic acid binding
  • 4.50398990564944 bayes_pls_golite062009
  • binding
  • 4.16717332578111 bayes_pls_golite062009
  • RNA binding
  • 2.92438188845619 bayes_pls_golite062009
  • transcription regulator activity
  • 2.18211199677674 bayes_pls_golite062009
  • mRNA binding
  • 1.94495589345842 bayes_pls_golite062009
  • DNA binding
  • 1.73925834998328 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 1.59667241219553 bayes_pls_golite062009
  • protein binding
  • 1.32954276279597 bayes_pls_golite062009
  • transcription factor activity
  • 0.873765500321315 bayes_pls_golite062009
  • 0.84116054461637 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.632534695085793 bayes_pls_golite062009
  • hydrolase activity
  • 0.520121701073354 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.294937517750882 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.100880394187931 bayes_pls_golite062009
    3
    Term Confidence Notes
  • nucleic acid binding
  • 4.50398990564944 bayes_pls_golite062009
  • binding
  • 4.16717332578111 bayes_pls_golite062009
  • RNA binding
  • 2.92438188845619 bayes_pls_golite062009
  • transcription regulator activity
  • 2.18211199677674 bayes_pls_golite062009
  • mRNA binding
  • 1.94495589345842 bayes_pls_golite062009
  • DNA binding
  • 1.73925834998328 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 1.59667241219553 bayes_pls_golite062009
  • protein binding
  • 1.32954276279597 bayes_pls_golite062009
  • transcription factor activity
  • 0.873765500321315 bayes_pls_golite062009
  • 0.84116054461637 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.632534695085793 bayes_pls_golite062009
  • hydrolase activity
  • 0.520121701073354 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.294937517750882 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.100880394187931 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle