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Protein Overview: YKU80

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen RGD2 YKU80 2 Unpublished Fields Lab Data
View Screen YKU80 CDC36 1 Unpublished Fields Lab Data
View Screen YKU80 VBA1 1 Unpublished Fields Lab Data
View Screen YKU80 TSA2 1 Unpublished Fields Lab Data
View Screen YKU80 YIM1 1 Unpublished Fields Lab Data
View Screen YKU80 ECO1 1 Unpublished Fields Lab Data
View Screen YKU80 SPT21 1 Unpublished Fields Lab Data
View Screen YKU80 YGL079W 1 Unpublished Fields Lab Data
View Screen YKU80 EFR3 1 Unpublished Fields Lab Data
View Screen YKU80 FRA2 1 Unpublished Fields Lab Data
View Screen YKU80 TAF9 1 Unpublished Fields Lab Data
View Screen YKU80 HAP2 1 Unpublished Fields Lab Data
View Screen YKU80 YMR245W 1 Unpublished Fields Lab Data
View Screen YKU80 PPT1 1 Unpublished Fields Lab Data
View Screen YKU80 URE2 1 Unpublished Fields Lab Data
View Screen YKU80 HUA1 1 Unpublished Fields Lab Data
View Screen YKU80 YOR302W 1 Unpublished Fields Lab Data
View Screen YKU80 BCY1 1 Unpublished Fields Lab Data
View Screen YKU80 TYE7 1 Unpublished Fields Lab Data
View Screen YKU80 YJL160C 1 Unpublished Fields Lab Data
View Screen YKU80 YPR147C 1 Unpublished Fields Lab Data
View Screen YKU80 BFA1 1 Unpublished Fields Lab Data
View Screen NAF1 YKU80 1 Hazbun TR, et al. (2003)
View Screen YKU80 PTK2 1 Unpublished Fields Lab Data
View Screen YKU80 AUR1 1 Unpublished Fields Lab Data
View Screen YKU80 TAE1 1 Unpublished Fields Lab Data
View Screen YKU80 TPO1 1 Unpublished Fields Lab Data
View Screen YKU80 PTC1 1 Unpublished Fields Lab Data
View Screen YKU80 EST1 1 Unpublished Fields Lab Data
View Screen YKU80 SIR2 1 Unpublished Fields Lab Data
View Screen YKU80 YML053C 1 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data YKU80 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..244]
[269..288]
[481..513]
PSI-BLAST 158.0 DNA binding C-terminal domain of ku70; Ku70 subunit
2 View Details [245..268]
[289..445]
PSI-BLAST 158.0 DNA binding C-terminal domain of ku70; Ku70 subunit
3 View Details [446..480]
[514..629]
PSI-BLAST 158.0 DNA binding C-terminal domain of ku70; Ku70 subunit

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • double-stranded telomeric DNA binding
  • 8.64621483095491 bayes_pls_golite062009
  • DNA-dependent protein kinase activity
  • 7.33495559751688 bayes_pls_golite062009
  • telomeric DNA binding
  • 5.16364366157397 bayes_pls_golite062009
  • transcription regulator activity
  • 3.05720838352689 bayes_pls_golite062009
  • binding
  • 2.75824485094584 bayes_pls_golite062009
  • nucleic acid binding
  • 2.08531850924748 bayes_pls_golite062009
  • promoter binding
  • 1.97164983798318 bayes_pls_golite062009
  • DNA binding
  • 1.91667917801679 bayes_pls_golite062009
  • transcription repressor activity
  • 1.69798374416156 bayes_pls_golite062009
  • transcription activator activity
  • 1.54159704189366 bayes_pls_golite062009
  • protein binding
  • 1.53311876872122 bayes_pls_golite062009
  • transcription factor activity
  • 1.37299910766941 bayes_pls_golite062009
  • DNA-dependent ATPase activity
  • 0.985753648509262 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.814975395718076 bayes_pls_golite062009
  • DNA helicase activity
  • 0.720743494912414 bayes_pls_golite062009
  • transcription corepressor activity
  • 0.702777559747981 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
  • 0.506640285146188 bayes_pls_golite062009
  • protein dimerization activity
  • 0.45109468643752 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.450760554291027 bayes_pls_golite062009
  • structural molecule activity
  • 0.375125487765613 bayes_pls_golite062009
  • transporter activity
  • 0.371057816653329 bayes_pls_golite062009
  • protein complex binding
  • 0.31789779419928 bayes_pls_golite062009
  • transcription factor binding
  • 0.184852480703492 bayes_pls_golite062009
  • protein C-terminus binding
  • 0.15516806759612 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle