YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: VBA1

General Information:
Name(s) found: VBA1 / YMR088C [SGD]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • Permease of basic amino acids in the vacuolar membrane [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 562 amino acids

    Gene Ontology:
    Cellular Component: fungal-type vacuole membrane [IDALink to PubMed article]
    Biological Process: epidermal cell fate specification [IDALink to PubMed article][IMPLink to PubMed article]
    basic amino acid transport [IMPLink to PubMed article]
    Molecular Function: basic amino acid transmembrane transporter activity [IDA][IMP]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLDETSNL LPPPEEAEAP PLEQKFHEYN LALPKFPILF SLWLGSFLSS LDSTIVANIM  60
   61 NRVAEEFSES SKKQWIATSF LLTNTAFQPL YGKLSDITGR KSALLTAQFF FGLGCLLTCF 120
  121 ARNVTEFSIA RAICGIGAGG LNAISSIAVS DICTARERGV YQGYANIVFG FGQLLGAPLG 180
  181 GVFIETIGWR ALFGIQVPVI MLCSVLAIKN INIKLFHVPP MKERYTLKNL SRIDIFGSLS 240
  241 LVATISGVLF LCSSQLNKLY LALFTIGSFI VFILVERYYA TEKILPFELL TRSFCLSSAV 300
  301 TVISSFVVFG EIFRSPIYLQ LLQNISVTKT GLFLIFPSIS VAVGSLVTGW VLRNTKINLA 360
  361 HCAYQIIFGG MIMQLLGLGL GYFLLSHLNP DYTIYDMLES ITFRSNSIWW KLIYVFASVL 420
  421 VSFGYACLLV ATLVSIVFTV EKSQQGTMTG VFYLWRSIGN VLGASLTLVS YENSLSSMLW 480
  481 NYMFKTKRDD EYHFTKKQYY SLINDSSYLR GPNFPTDIFV RILDVYKKAF LISYIPNIAL 540
  541 AAVGIVLSLY LVKHTYKRSS SS

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) AGP2 AVT1 AVT3 AVT4 AVT6 BPT1 DIP5 GAP1 TPO3 UGA4 VBA1 VBA2

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen TRM82 VBA1 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..212]
    [276..423]    		 PSI-BLAST 7.522879 No description for 1ja5A_ was found.
    2 View Details [213..275] PSI-BLAST 7.522879 No description for 1ja5A_ was found.
    3 View Details [424..562] MSA 2.774997 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle